6H3R

Crystal structure of Smad2 without exon -MH1 bound to the CAGAC site.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.201 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Recognition of 5GC DNA motifs is conserved in BMP and TGF-beta activated Smads

Ruiz, L.Kaczmarska, Z.Aragon, E.Gomes, T.Martin Malpartida, P.de Martin Garrido, N.Freier, R.Marquez, J.A.Macias, M.J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Mothers against decapentaplegic homolog
A, B
139Homo sapiensMutation(s): 0 
Gene Names: SMAD2
Find proteins for B7Z5N5 (Homo sapiens)
Go to Gene View: SMAD2
Go to UniProtKB:  B7Z5N5
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (5'-D(P*GP*AP*GP*TP*GP*TP*CP*TP*GP*CP*AP*GP*AP*CP*AP*CP*TP*C)-3')C,D18Homo sapiens
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.201 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 80.140α = 90.00
b = 80.140β = 90.00
c = 143.840γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
BUSTERrefinement
XSCALEdata scaling
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European CommissionGermanyEMBL_291772
European CommissionSpainIRBPostPro2.0_600404
Ministry of Economy and CompetitivenessSpainBFU2014-53787-P
European CommissionFrance653706

Revision History 

  • Version 1.0: 2019-09-18
    Type: Initial release