6H3R

Crystal structure of Smad2 without exon -MH1 bound to the CAGAC site.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.201 
  • R-Value Observed: 0.202 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural basis for distinct roles of SMAD2 and SMAD3 in FOXH1 pioneer-directed TGF-beta signaling

Aragon, E.Wang, Q.Zou, Y.Morgani, S.M.Ruiz, L.Kaczmarska, Z.Su, J.Torner, C.Tian, L.Hu, J.Shu, W.Agrawal, S.Gomes, T.Marquez, J.A.Hadjantonakis, A.-K.Macias, M.J.Massague, J.

(2020) Genes Dev 


Macromolecules

Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Mothers against decapentaplegic homologA, B139Homo sapiensMutation(s): 0 
Gene Names: SMAD2
UniProt & NIH Common Fund Data Resources
Find proteins for B7Z5N5 (Homo sapiens)
Explore B7Z5N5 
Go to UniProtKB:  B7Z5N5
Protein Feature View
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  • Reference Sequence
  • Find similar nucleic acids by:  Sequence   |   Structure
  • Entity ID: 2
    MoleculeChainsLengthOrganismImage
    DNA (5'-D(P*GP*AP*GP*TP*GP*TP*CP*TP*GP*CP*AP*GP*AP*CP*AP*CP*TP*C)-3')C, D18Homo sapiens
    Protein Feature View
    Expand
    • Reference Sequence
    Small Molecules
    Ligands 1 Unique
    IDChainsName / Formula / InChI Key2D Diagram3D Interactions
    ZN
    Query on ZN

    Download Ideal Coordinates CCD File 
    E [auth A], F [auth B]ZINC ION
    Zn
    PTFCDOFLOPIGGS-UHFFFAOYSA-N
     Ligand Interaction
    Experimental Data & Validation

    Experimental Data

    • Method: X-RAY DIFFRACTION
    • Resolution: 2.75 Å
    • R-Value Free: 0.222 
    • R-Value Work: 0.201 
    • R-Value Observed: 0.202 
    • Space Group: P 43 21 2
    Unit Cell:
    Length ( Å )Angle ( ˚ )
    a = 80.14α = 90
    b = 80.14β = 90
    c = 143.84γ = 90
    Software Package:
    Software NamePurpose
    BUSTERrefinement
    XDSdata reduction
    XSCALEdata scaling
    PHASERphasing

    Structure Validation

    View Full Validation Report




    Entry History & Funding Information

    Deposition Data


    Funding OrganizationLocationGrant Number
    European CommissionGermanyEMBL_291772
    European CommissionSpainIRBPostPro2.0_600404
    Ministry of Economy and CompetitivenessSpainBFU2014-53787-P
    European CommissionFrance653706

    Revision History  (Full details and data files)

    • Version 1.0: 2019-09-18
      Type: Initial release
    • Version 1.1: 2020-09-30
      Changes: Database references