6H2X | pdb_00006h2x

MukB coiled-coil elbow from E. coli


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 
    0.297 (Depositor), 0.285 (DCC) 
  • R-Value Work: 
    0.243 (Depositor) 
  • R-Value Observed: 
    0.246 (Depositor) 

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 6H2X

This is version 1.3 of the entry. See complete history

Literature

A folded conformation of MukBEF and cohesin.

Burmann, F.Lee, B.G.Than, T.Sinn, L.O'Reilly, F.J.Yatskevich, S.Rappsilber, J.Hu, B.Nasmyth, K.Lowe, J.

(2019) Nat Struct Mol Biol 26: 227-236

  • DOI: https://doi.org/10.1038/s41594-019-0196-z
  • Primary Citation Related Structures: 
    6H2X

  • PubMed Abstract: 

    Structural maintenance of chromosomes (SMC)-kleisin complexes organize chromosomal DNAs in all domains of life, with key roles in chromosome segregation, DNA repair and regulation of gene expression. They function through the entrapment and active translocation of DNA, but the underlying conformational changes are largely unclear. Using structural biology, mass spectrometry and cross-linking, we investigated the architecture of two evolutionarily distant SMC-kleisin complexes: MukBEF from Escherichia coli, and cohesin from Saccharomyces cerevisiae. We show that both contain a dynamic coiled-coil discontinuity, the elbow, near the middle of their arms that permits a folded conformation. Bending at the elbow brings into proximity the hinge dimerization domain and the head-kleisin module, situated at opposite ends of the arms. Our findings favour SMC activity models that include a large conformational change in the arms, such as a relative movement between DNA contact sites during DNA loading and translocation.


  • Organizational Affiliation
    • MRC Laboratory of Molecular Biology, Cambridge, UK.

Macromolecule Content 

  • Total Structure Weight: 42.36 kDa 
  • Atom Count: 2,848 
  • Modeled Residue Count: 352 
  • Deposited Residue Count: 367 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Chromosome partition protein MukB,Chromosome partition protein MukB367Escherichia coli K-12Mutation(s): 0 
Gene Names: mukBb0924JW0907
UniProt
Find proteins for P22523 (Escherichia coli (strain K12))
Explore P22523 
Go to UniProtKB:  P22523
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP22523
Sequence Annotations
Expand
Reference Sequence

Small Molecules

Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free:  0.297 (Depositor), 0.285 (DCC) 
  • R-Value Work:  0.243 (Depositor) 
  • R-Value Observed: 0.246 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 81.122α = 90
b = 35.036β = 93.6
c = 81.713γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
REFMACrefinement
Aimlessdata scaling
XDSdata reduction
BUCCANEERmodel building
Cootmodel building
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom202754/Z/16/Z
Medical Research Council (United Kingdom)United KingdomU105184326

Revision History  (Full details and data files)

  • Version 1.0: 2019-03-06
    Type: Initial release
  • Version 1.1: 2019-03-20
    Changes: Data collection, Database references
  • Version 1.2: 2024-05-01
    Changes: Data collection, Database references, Refinement description
  • Version 1.3: 2024-10-23
    Changes: Structure summary