6GY9

Fucose-functionalized precision glycomacromolecules targeting human norovirus capsid protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.83 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.200 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Fucose-Functionalized Precision Glycomacromolecules Targeting Human Norovirus Capsid Protein.

Bucher, K.S.Yan, H.Creutznacher, R.Ruoff, K.Mallagaray, A.Grafmuller, A.Dirks, J.S.Kilic, T.Weickert, S.Rubailo, A.Drescher, M.Schmidt, S.Hansman, G.Peters, T.Uetrecht, C.Hartmann, L.

(2018) Biomacromolecules 19: 3714-3724


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Capsid protein
A, B
314Norwalk virusMutation(s): 0 
Find proteins for Q5F4T5 (Norwalk virus)
Go to UniProtKB:  Q5F4T5
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EDO
Query on EDO

Download SDF File 
Download CCD File 
A, B
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
KBA
Query on KBA

Download SDF File 
Download CCD File 
A
(2~{S},3~{S},4~{R},5~{S},6~{R})-2-methyl-6-[2-(1,2,3-triazol-1-yl)ethoxy]oxane-3,4,5-triol
C10 H17 N3 O5
AQLGVIQGWAYMPY-LOLPMWEVSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.83 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.200 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 66.280α = 90.00
b = 80.370β = 101.66
c = 71.510γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
PHASERphasing
XSCALEdata scaling
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-08-22
    Type: Initial release
  • Version 1.1: 2018-08-29
    Type: Data collection, Database references
  • Version 1.2: 2018-09-19
    Type: Data collection, Database references