6GVY

Mutant M16A of RNA dependent RNA polymerase 3D from Foot-and-Mouth disease Virus complexed with an template -primer RNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.274 
  • R-Value Work: 0.233 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Contribution of a multifunctional polymerase region of foot-and-mouth disease virus to lethal mutagenesis.

de la Higuera, I.Ferrer-Orta, C.Moreno, E.de Avila, A.I.Soria, M.E.Singh, K.Caridi, F.Sobrino, F.Sarafianos, S.G.Perales, C.Verdaguer, N.Domingo, E.

(2018) J. Virol. --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Genome polyprotein
A
481Foot-and-mouth disease virus - type CMutation(s): 1 
Find proteins for Q0QEE0 (Foot-and-mouth disease virus - type C)
Go to UniProtKB:  Q0QEE0
Entity ID: 2
MoleculeChainsLengthOrganism
RNA (5'-R(P*CP*CP*GP*GP*G)-3')B5synthetic construct
Entity ID: 3
MoleculeChainsLengthOrganism
RNA (5'-R(P*CP*UP*CP*CP*CP*GP*GP*G)-3')C8synthetic construct
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.274 
  • R-Value Work: 0.233 
  • Space Group: P 32 2 1
Unit Cell:
Length (Å)Angle (°)
a = 94.073α = 90.00
b = 94.073β = 90.00
c = 99.806γ = 120.00
Software Package:
Software NamePurpose
REFMACphasing
SCALAdata scaling
XDSdata reduction
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Spanish Ministry of Economy and CompetitivenessSpainBIO2014-54588-
Spanish Ministry of Economy and CompetitivenessSpainMaria de Maeztu Unit of Excellence MDM-2014-0435

Revision History 

  • Version 1.0: 2018-08-01
    Type: Initial release
  • Version 1.1: 2018-08-15
    Type: Data collection, Database references