Biological Assembly 1  

 3D View: Structure | Ligand Interaction

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Protein Workshop | Ligand Explorer

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: isothermal titration calorimetry

Macromolecule Content

• Total Structure Weight: 17298.49 
• Atom Count: 1194 
• Residue Count: 124 
• Unique protein chains: 1
• Unique nucleic acid chains: 1

6GVT

Hybrid structure of the pRN1 helix bundle domain in complex with DNA and 2 ATP molecules

• DOI: 10.2210/pdb6GVT/pdb
• BMRB: 34290

• Classification: DNA BINDING PROTEIN
• Organism(s): Sulfolobus islandicus
• Expression System: Escherichia coli BL21(DE3)


• Deposited: 2018-06-21 Released: 2018-12-26 
• Deposition Author(s): Boudet, J., Wiegand, T., Meier, B.H., Lipps, G., Allain, F.H.-T.
• Funding Organization(s): Swiss National Science Foundation 

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 200 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

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• Method: SOLID-STATE NMR
• Conformers Calculated: 200 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

wwPDB Validation

Currently 6GVT does not have a wwPDB validation report.

Literature

A Small Helical Bundle Prepares Primer Synthesis by Binding Two Nucleotides that Enhance Sequence-Specific Recognition of the DNA Template.

Boudet, J., Devillier, J.C., Wiegand, T., Salmon, L., Meier, B.H., Lipps, G., Allain, F.H.

(2019) Cell 176: 154-166.e13

• PubMed: 30595448 
• Primary Citation of Related Structures:  
  6GVU, 6GVQ, 6GT7

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details
functional pRN1 primase	B	115	Sulfolobus islandicus	Mutation(s): 0
Find proteins for Q54324 (Sulfolobus islandicus) Go to UniProtKB:  Q54324

Entity ID: 1
Molecule	Chains	Length	Organism
DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3')	A	9	Sulfolobus islandicus

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
ATP	B	ADENOSINE-5'-TRIPHOSPHATE C10 H16 N5 O13 P3 ZKHQWZAMYRWXGA-KQYNXXCUSA-N
MG	B	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 200 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

• Method: SOLID-STATE NMR
• Conformers Calculated: 200 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Currently 6GVT does not have a wwPDB validation report.

Entry History & Funding Information

Deposition Data

• Deposited Date: 2018-06-21 
• Released Date: 2018-12-26 
• Deposition Author(s): Boudet, J., Wiegand, T., Meier, B.H., Lipps, G., Allain, F.H.-T.

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Funding Organization	Location	Grant Number
Swiss National Science Foundation	Switzerland	310030_163345

Revision History 

• Version 1.0: 2018-12-26
  Type: Initial release
• Version 1.1: 2019-01-09
  Type: Data collection, Database references
• Version 1.2: 2019-01-23
  Type: Data collection, Database references