6GVT

Hybrid structure of the pRN1 helix bundle domain in complex with DNA and 2 ATP molecules


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

  • Method: SOLID-STATE NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation

Currently 6GVT does not have a wwPDB validation report.


This is version 1.2 of the entry. See complete history

Literature

A Small Helical Bundle Prepares Primer Synthesis by Binding Two Nucleotides that Enhance Sequence-Specific Recognition of the DNA Template.

Boudet, J.Devillier, J.C.Wiegand, T.Salmon, L.Meier, B.H.Lipps, G.Allain, F.H.

(2019) Cell 176: 154-166.e13


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
functional pRN1 primase
B
115Sulfolobus islandicusMutation(s): 0 
Find proteins for Q54324 (Sulfolobus islandicus)
Go to UniProtKB:  Q54324
Entity ID: 1
MoleculeChainsLengthOrganism
DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3')A9Sulfolobus islandicus
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ATP
Query on ATP

Download SDF File 
Download CCD File 
B
ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
B
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 
  • Method: SOLID-STATE NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

Currently 6GVT does not have a wwPDB validation report.



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swiss National Science FoundationSwitzerland310030_163345

Revision History 

  • Version 1.0: 2018-12-26
    Type: Initial release
  • Version 1.1: 2019-01-09
    Type: Data collection, Database references
  • Version 1.2: 2019-01-23
    Type: Data collection, Database references