6GVK

Second pair of Fibronectin type III domains of integrin beta4 (T1663R mutant) bound to the bullous pemphigoid antigen BP230 (BPAG1e)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.210 
  • R-Value Work: 0.195 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Integrin alpha6Beta4 recognition of a linear motif of bullous pemphigoid antigen BP230 controls its recruitment to hemidesmosomes

Manso, J.A.Gomez-Hernandez, M.Carabias, A.Alonso-Garcia, N.Garcia-Rubio, I.Sonnenberg, A.de Pereda, J.M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Integrin beta-4
A
214Homo sapiensMutation(s): 1 
Gene Names: ITGB4
Find proteins for P16144 (Homo sapiens)
Go to Gene View: ITGB4
Go to UniProtKB:  P16144
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Dystonin
B
30Homo sapiensMutation(s): 0 
Gene Names: DST (BP230, BP240, BPAG1, DMH, DT, KIAA0728)
Find proteins for Q03001 (Homo sapiens)
Go to Gene View: DST
Go to UniProtKB:  Q03001
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.210 
  • R-Value Work: 0.195 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 105.580α = 90.00
b = 59.520β = 113.50
c = 42.400γ = 90.00
Software Package:
Software NamePurpose
XSCALEdata scaling
PHASERphasing
PHENIXrefinement
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Spanish Ministry of Economy and CompetitivenessSpainBFU2009-08389
Spanish Ministry of Economy and CompetitivenessSpainBFU2015-69499-P

Revision History 

  • Version 1.0: 2019-03-20
    Type: Initial release