6GU6

CDK1/Cks2 in complex with Dinaciclib


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.33 Å
  • R-Value Free: 0.246 
  • R-Value Work: 0.201 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Differences in the Conformational Energy Landscape of CDK1 and CDK2 Suggest a Mechanism for Achieving Selective CDK Inhibition.

Wood, D.J.Korolchuk, S.Tatum, N.J.Wang, L.Z.Endicott, J.A.Noble, M.E.M.Martin, M.P.

(2018) Cell Chem Biol --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Cyclin-dependent kinase 1
A
302Homo sapiensMutation(s): 0 
Gene Names: CDK1 (CDC2, CDC28A, CDKN1, P34CDC2)
EC: 2.7.11.22, 2.7.11.23
Find proteins for P06493 (Homo sapiens)
Go to Gene View: CDK1
Go to UniProtKB:  P06493
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Cyclin-dependent kinases regulatory subunit
B
84Desmodus rotundusMutation(s): 0 
Find proteins for K9J4F7 (Desmodus rotundus)
Go to UniProtKB:  K9J4F7
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
1QK
Query on 1QK

Download SDF File 
Download CCD File 
A
3-[({3-ethyl-5-[(2S)-2-(2-hydroxyethyl)piperidin-1-yl]pyrazolo[1,5-a]pyrimidin-7-yl}amino)methyl]-1-hydroxypyridinium
DINACICLIB
C21 H29 N6 O2
WBUFFOKXERTKGU-SFHVURJKSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.33 Å
  • R-Value Free: 0.246 
  • R-Value Work: 0.201 
  • Space Group: I 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 93.704α = 90.00
b = 97.232β = 90.00
c = 108.564γ = 90.00
Software Package:
Software NamePurpose
Aimlessdata scaling
REFMACrefinement
xia2data reduction
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (United Kingdom)United KingdomMR/N009738/1
Cancer Research UKUnited KingdomC2115/A21421

Revision History 

  • Version 1.0: 2018-12-05
    Type: Initial release