Biological Assembly 1  

 3D View: Structure | Ligand Interaction

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Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 78-mer - ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 78-mer -A2BCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXY 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: microscopy

Macromolecule Content

• Total Structure Weight: 3191429.50 
• Atom Count: 212058 
• Residue Count: 17976 
• Unique protein chains: 78
• Unique nucleic acid chains: 6

6GQV

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

• DOI: 10.2210/pdb6GQV/pdb
• EMDataResource: EMD-0049

• Classification: RIBOSOME
• Organism(s): Saccharomyces cerevisiae (strain ATCC 204508 / S288c), Saccharomyces cerevisiae


• Deposited: 2018-06-08 Released: 2018-07-11 
• Deposition Author(s): Pellegrino, S., Yusupov, M., Yusupova, G., Hashem, Y.
• Funding Organization(s): null 

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 4 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Structural Insights into the Role of Diphthamide on Elongation Factor 2 in mRNA Reading-Frame Maintenance.

Pellegrino, S., Demeshkina, N., Mancera-Martinez, E., Melnikov, S., Simonetti, A., Myasnikov, A., Yusupov, M., Yusupova, G., Hashem, Y.

(2018) J. Mol. Biol. 430: 2677-2687

• PubMed: 29886014 
• DOI: 10.1016/j.jmb.2018.06.006
• Primary Citation of Related Structures:  
  6GQB, 6GQ1


• PubMed Abstract: 
  

One of the most critical steps of protein biosynthesis is the coupled movement of mRNA, which encodes genetic information, with tRNAs on the ribosome. In eukaryotes, this process is catalyzed by a conserved G-protein, the elongation factor 2 (eEF2), which carries a unique post-translational modification, called diphthamide, found in all eukaryotic species. Here we present near-atomic resolution cryo-electron microscopy structures of yeast 80S ribosome complexes containing mRNA, tRNA and eEF2 trapped in different GTP-hydrolysis states which provide further structural insights into the role of diphthamide in the mechanism of translation fidelity in eukaryotes.

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Organizational Affiliation: 

Department of Integrated Structural Biology, Institute of Genetics and Molecular and Cellular Biology, CNRS UMR710, INSERM U964, University of Strasbourg, Strasbourg 67000, France.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details
60S acidic ribosomal protein P0	P0	189	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPP0 (L10E, RPA0, RPL10E, RPLA0)
Find proteins for P05317 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P05317

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L12-A	P2	94	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL12A (RPL15B)
Find proteins for P0CX53 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX53

Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L2-A	A	252	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL2A (RPL5B)
Find proteins for P0CX45 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX45

Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L3	B	386	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL3 (MAK8, TCM1)
Find proteins for P14126 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL3 Go to UniProtKB:  P14126

Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L4-A	C	361	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL4A (RPL2, RPL2A)
Find proteins for P10664 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P10664

Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L5	D	296	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL5 (RPL1, RPL1A)
Find proteins for P26321 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL5 Go to UniProtKB:  P26321

Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L6-A	E	175	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL6A (RPL17A, YL16A)
Find proteins for Q02326 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  Q02326

Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L7-A	F	222	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL7A (RPL6A, RPL8A, YL8A)
Find proteins for P05737 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL7A Go to UniProtKB:  P05737

Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L8-A	G	233	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL8A (MAK7, RPL4A)
Find proteins for P17076 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P17076

Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L9-A	H	191	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL9A (RPL8A, RPL9)
Find proteins for P05738 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P05738

Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L10	I	220	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL10 (GRC5, QSR1)
Find proteins for P41805 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL10 Go to UniProtKB:  P41805

Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L11-B	J	169	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL11B (RP39B, RPL16B)
Find proteins for Q3E757 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  Q3E757

Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L13-A	L	193	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL13A
Find proteins for Q12690 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL13A Go to UniProtKB:  Q12690

Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L14-A	M	136	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL14A
Find proteins for P36105 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P36105

Entity ID: 18
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L15-A	N	203	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL15A (RPL10A, RPL13A, YL10A)
Find proteins for P05748 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P05748

Entity ID: 19
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L16-A	O	197	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL16A (RPL13, RPL21A)
Find proteins for P26784 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P26784

Entity ID: 20
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L17-A	P	183	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL17A (RPL17, RPL20A)
Find proteins for P05740 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P05740

Entity ID: 21
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L18-A	Q	185	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL18A (RP28A)
Find proteins for P0CX49 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL18A Go to UniProtKB:  P0CX49

Entity ID: 22
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L19-A	R	188	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL19A (RPL23A, YL14A)
Find proteins for P0CX82 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX82

Entity ID: 23
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L20-A	S	172	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL20A (RPL18A, RPL18A2)
Find proteins for P0CX23 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX23

Entity ID: 24
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L21-A	T	159	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL21A (URP1)
Find proteins for Q02753 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  Q02753

Entity ID: 25
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L22-A	U	100	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL22A
Find proteins for P05749 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P05749

Entity ID: 26
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L23-A	V	136	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL23A (RPL17A, RPL17AA)
Find proteins for P0CX41 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL23A Go to UniProtKB:  P0CX41

Entity ID: 27
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L24-A	W	62	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL24A (RP29, RPL30A)
Find proteins for P04449 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P04449

Entity ID: 28
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L25	X	121	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL25
Find proteins for P04456 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P04456

Entity ID: 29
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L26-A	Y	126	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL26A (RPL26, RPL33A)
Find proteins for P05743 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P05743

Entity ID: 30
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L27-A	Z	135	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL27A (RPL27)
Find proteins for P0C2H6 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL27A Go to UniProtKB:  P0C2H6

Entity ID: 31
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L28	a	148	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL28 (CYH2)
Find proteins for P02406 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL28 Go to UniProtKB:  P02406

Entity ID: 32
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L29	b	58	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL29 (YL43)
Find proteins for P05747 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL29 Go to UniProtKB:  P05747

Entity ID: 33
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L30	c	97	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL30 (RPL32)
Find proteins for P14120 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL30 Go to UniProtKB:  P14120

Entity ID: 34
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L31-A	d	109	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL31A (RPL34, RPL34A)
Find proteins for P0C2H8 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0C2H8

Entity ID: 35
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L32	e	127	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL32
Find proteins for P38061 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL32 Go to UniProtKB:  P38061

Entity ID: 36
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L33-A	f	106	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL33A (RPL37A)
Find proteins for P05744 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P05744

Entity ID: 37
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L34-A	g	112	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL34A
Find proteins for P87262 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P87262

Entity ID: 38
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L35-A	h	119	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL35A (SOS1)
Find proteins for P0CX84 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL35A Go to UniProtKB:  P0CX84

Entity ID: 39
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L36-A	i	99	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL36A (RPL39A)
Find proteins for P05745 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL36A Go to UniProtKB:  P05745

Entity ID: 40
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L37-A	j	87	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL37A (RPL35A)
Find proteins for P49166 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL37A Go to UniProtKB:  P49166

Entity ID: 41
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L38	k	77	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL38
Find proteins for P49167 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL38 Go to UniProtKB:  P49167

Entity ID: 42
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L39	l	50	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL39 (RPL46, SPB2)
Find proteins for P04650 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL39 Go to UniProtKB:  P04650

Entity ID: 43
Molecule	Chains	Sequence Length	Organism	Details
Ubiquitin-60S ribosomal protein L40	m	52	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL40A (UBI1)
Find proteins for P0CH08 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CH08

Entity ID: 44
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L41-B	n	25	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL41B (RPL47B, YL41B)
Find proteins for P0CX87 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX87

Entity ID: 45
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L42-A	o	105	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL42A (RPL41A, SCL41A)
Find proteins for P0CX27 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX27

Entity ID: 46
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L43-A	p	91	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL43A
Find proteins for P0CX25 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX25

Entity ID: 48
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S0-A	q	206	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS0A (NAB1, NAB1A, YST1)
Find proteins for P32905 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P32905

Entity ID: 49
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S1-A	r	214	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS1A (PLC1, RPS10A)
Find proteins for P33442 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P33442

Entity ID: 50
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S2	s	217	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS2 (RPS4, SUP38, SUP44)
Find proteins for P25443 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPS2 Go to UniProtKB:  P25443

Entity ID: 51
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S3	t	223	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS3 (SUF14)
Find proteins for P05750 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPS3 Go to UniProtKB:  P05750

Entity ID: 52
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S4-A	u	260	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS4A (RPS7B)
Find proteins for P0CX35 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX35

Entity ID: 53
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S5	v	206	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS5 (RPS2)
Find proteins for P26783 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPS5 Go to UniProtKB:  P26783

Entity ID: 54
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S6-A	w	223	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS6A (RPS101, RPS10B)
Find proteins for P0CX37 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX37

Entity ID: 55
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S7-A	x	184	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS7A (RPS30)
Find proteins for P26786 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P26786

Entity ID: 56
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S8-A	y	199	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS8A (RPS14A)
Find proteins for P0CX39 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX39

Entity ID: 57
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S9-A	z	185	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS9A (RPS13A, YS11A)
Find proteins for O13516 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  O13516

Entity ID: 58
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S10-A	AA	105	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS10A
Find proteins for Q08745 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  Q08745

Entity ID: 59
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S11-A	AB	153	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS11A (RPS18A)
Find proteins for P0CX47 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX47

Entity ID: 60
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S12	AC	124	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS12
Find proteins for P48589 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPS12 Go to UniProtKB:  P48589

Entity ID: 61
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S13	AD	150	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS13 (RPS13C)
Find proteins for P05756 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPS13 Go to UniProtKB:  P05756

Entity ID: 62
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S14-B	AE	127	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS14B (CRY2)
Find proteins for P39516 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P39516

Entity ID: 63
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S15	AF	124	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS15 (RPS21)
Find proteins for Q01855 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPS15 Go to UniProtKB:  Q01855

Entity ID: 64
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S16-A	AG	141	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS16A (RP61R)
Find proteins for P0CX51 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX51

Entity ID: 65
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S17-B	AH	125	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS17B (RP51B)
Find proteins for P14127 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P14127

Entity ID: 66
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S18-A	AI	145	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS18A
Find proteins for P0CX55 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX55

Entity ID: 67
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S19-A	AJ	143	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS19A (RP55A, RPS16AA)
Find proteins for P07280 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P07280

Entity ID: 68
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S20	AK	107	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS20 (URP2)
Find proteins for P38701 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPS20 Go to UniProtKB:  P38701

Entity ID: 69
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S21-A	AL	87	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS21A (RPS25, RPS25A, RPS26A)
Find proteins for P0C0V8 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0C0V8

Entity ID: 70
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S22-A	AM	129	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS22A (RPS24, RPS24A)
Find proteins for P0C0W1 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0C0W1

Entity ID: 71
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S23-A	AN	144	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS23A (RPS28A)
Find proteins for P0CX29 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX29

Entity ID: 72
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S24-A	AO	134	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS24A (RPS24EA)
Find proteins for P0CX31 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX31

Entity ID: 73
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S25-A	AP	70	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS25A (RPS31A)
Find proteins for Q3E792 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  Q3E792

Entity ID: 74
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S26-B	AQ	97	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS26B
Find proteins for P39939 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P39939

Entity ID: 75
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S27-A	AR	81	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS27A
Find proteins for P35997 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPS27A Go to UniProtKB:  P35997

Entity ID: 76
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S28-A	AS	63	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS28A (RPS33, RPS33A)
Find proteins for Q3E7X9 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  Q3E7X9

Entity ID: 77
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S29-A	AT	53	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS29A (RPS36A, YS29A)
Find proteins for P41057 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P41057

Entity ID: 78
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S30-A	AU	60	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS30A
Find proteins for P0CX33 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX33

Entity ID: 79
Molecule	Chains	Sequence Length	Organism	Details
Guanine nucleotide-binding protein subunit beta-like protein	AV	318	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: ASC1 (CPC2)
Find proteins for P38011 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P38011

Entity ID: 80
Molecule	Chains	Sequence Length	Organism	Details
Ubiquitin-40S ribosomal protein S31	AW	37	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS31 (RPS37, UBI3)
Find proteins for P05759 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P05759

Entity ID: 81
Molecule	Chains	Sequence Length	Organism	Details
Elongation factor 2	AX	837	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: EFT1, EFT2
Find proteins for P32324 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P32324

Entity ID: 84
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein L1-A	BA	204	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL1A (SSM1, SSM1A)
Find proteins for P0CX43 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX43

Entity ID: 1
Molecule	Chains	Length	Organism
25S ribosomal RNA	1	3396	Saccharomyces cerevisiae

Entity ID: 2
Molecule	Chains	Length	Organism
5S ribosomal RNA	3	121	Saccharomyces cerevisiae

Entity ID: 3
Molecule	Chains	Length	Organism
5.8S ribosomal RNA	4	158	Saccharomyces cerevisiae

Entity ID: 47
Molecule	Chains	Length	Organism
18S ribosomal RNA	2	1797	Saccharomyces cerevisiae

Entity ID: 82
Molecule	Chains	Length	Organism
Transfer RNA - Phe	AY	76	Saccharomyces cerevisiae

Entity ID: 83
Molecule	Chains	Length	Organism
Messenger RNA	AZ	7	Saccharomyces cerevisiae

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
ZN	AQ, AR, AT, AW, j, m, o, p	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N
GCP	AX	PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER C11 H18 N5 O13 P3 PHBDHXOBFUBCJD-KQYNXXCUSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
DDE	AX	L-PEPTIDE LINKING	C13 H24 N5 O3		HIS

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 4 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Deposited Date: 2018-06-08 
• Released Date: 2018-07-11 
• Deposition Author(s): Pellegrino, S., Yusupov, M., Yusupova, G., Hashem, Y.

---

Funding Organization	Location	Grant Number
	France	ANR-15-CE11-0021-01
	France	FRM-DBF20160635745
		ERC-294312
	France	ANR-14-ACHN-0024

Revision History 

• Version 1.0: 2018-07-11
  Type: Initial release
• Version 1.1: 2018-08-08
  Type: Data collection, Database references