6GPG

Structure of the RIG-I Singleton-Merten syndrome variant C268F


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.894 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.210 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Unified mechanisms for self-RNA recognition by RIG-I Singleton-Merten syndrome variants.

Lassig, C.Lammens, K.Gorenflos Lopez, J.L.Michalski, S.Fettscher, O.Hopfner, K.P.

(2018) Elife 7: --


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Probable ATP-dependent RNA helicase DDX58
A
714Homo sapiensMutation(s): 1 
Gene Names: DDX58
EC: 3.6.4.13
Find proteins for O95786 (Homo sapiens)
Go to Gene View: DDX58
Go to UniProtKB:  O95786
Entity ID: 1
MoleculeChainsLengthOrganism
RNA (5'-R(*CP*GP*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*CP*G)-3')B,C14synthetic construct
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.894 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.210 
  • Space Group: P 65 2 2
Unit Cell:
Length (Å)Angle (°)
a = 175.620α = 90.00
b = 175.620β = 90.00
c = 109.530γ = 120.00
Software Package:
Software NamePurpose
PHENIXrefinement
XSCALEdata scaling
PHASERphasing
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research FoundationGermanyHO2489/8
German Research FoundationGermanyCRC1054 project B02

Revision History 

  • Version 1.0: 2018-08-08
    Type: Initial release