6GNK

Exoenzyme S from Pseudomonas aeruginosa in complex with human 14-3-3 protein beta, trimeric crystal form bound to Carba-NAD


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.239 
  • R-Value Work: 0.215 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

14-3-3 proteins activate Pseudomonas exotoxins-S and -T by chaperoning a hydrophobic surface.

Karlberg, T.Hornyak, P.Pinto, A.F.Milanova, S.Ebrahimi, M.Lindberg, M.Pullen, N.Nordstrom, A.Loverli, E.Caraballo, R.Wong, E.V.Nareoja, K.Thorsell, A.G.Elofsson, M.De La Cruz, E.M.Bjorkegren, C.Schuler, H.

(2018) Nat Commun 9: 3785-3785


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
14-3-3 protein beta/alpha
A, B
243Homo sapiensMutation(s): 0 
Gene Names: YWHAB
Find proteins for P31946 (Homo sapiens)
Go to Gene View: YWHAB
Go to UniProtKB:  P31946
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Exoenzyme S
C
244Pseudomonas aeruginosaMutation(s): 2 
Gene Names: exoS
Find proteins for Q93SQ1 (Pseudomonas aeruginosa)
Go to UniProtKB:  Q93SQ1
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CNA
Query on CNA

Download SDF File 
Download CCD File 
C
CARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C22 H30 N7 O13 P2
DGPLSUKWXXSBCU-VGXGLJSLSA-O
 Ligand Interaction
MPD
Query on MPD

Download SDF File 
Download CCD File 
C
(4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.239 
  • R-Value Work: 0.215 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 160.920α = 90.00
b = 56.770β = 126.45
c = 120.350γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
BUSTERrefinement
SCALAdata scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
SwedenSB12-0022

Revision History 

  • Version 1.0: 2018-09-26
    Type: Initial release