6GN4

tc-DNA/tc-DNA duplex


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the least restraint violations 

wwPDB Validation 3D Report Full Report


This is version 2.0 of the entry. See complete history

Literature

NMR solution structure of fully modified tc-DNA/RNA, tc-DNA/DNA and tc-DNA/tc-DNA duplexes

Istrate, A.Johannsen, S.Istrate, A.Sigel, R.K.O.Leumann, C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsLengthOrganism
Tc-DNA (5'-D(*(TCJ)P*(TTK)P*(TCJ)P*(TCS)P*(TCS)P*(TCJ)P*(TTK)P*(TTK)P*(TCY)P*(TCJ))-3')A10Homo sapiens
Entity ID: 2
MoleculeChainsLengthOrganism
Tc-DNA (5'-D(*(TCS)P*(TTK)P*(TCY)P*(TCY)P*(TCS)P*(TCJ)P*(TCJ)P*(TCS)P*(TCY)P*(TCS))-3')B10Homo sapiens
Small Molecules
Modified Residues  6 Unique
IDChainsTypeFormula2D DiagramParent
F7H
Query on F7H
A
DNA linkingC13 H17 N3 O4DC
F7K
Query on F7K
B
DNA linkingC13 H15 N5 O4DG
EAN
Query on EAN
A, B
DNA linkingC13 H17 N2 O8 PDT
TCY
Query on TCY
A, B
DNA linkingC13 H16 N5 O6 PDA
F4Q
Query on F4Q
A, B
DNA linkingC13 H16 N5 O7 PDG
TCJ
Query on TCJ
A, B
DNA linkingC13 H18 N3 O7 PDC
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the least restraint violations 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swiss National Science FoundationSwitzerland--

Revision History 

  • Version 1.0: 2018-06-06
    Type: Initial release
  • Version 2.0: 2018-06-13
    Type: Atomic model, Data collection, Derived calculations, Non-polymer description, Polymer sequence, Structure summary