6GLR

Crystal structure of hMTH1 N33G in complex with TH scaffold 1 in the presence of acetate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.601 Å
  • R-Value Free: 0.199 
  • R-Value Work: 0.169 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

hMTH1 N33G in complex with TH scaffold 1

Eberle, S.A.Wiedmer, L.Sledz, P.Caflisch, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
7,8-dihydro-8-oxoguanine triphosphatase
A, B
182Homo sapiensMutation(s): 1 
Gene Names: NUDT1 (MTH1)
EC: 3.6.1.55
Find proteins for P36639 (Homo sapiens)
Go to Gene View: NUDT1
Go to UniProtKB:  P36639
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
ACT
Query on ACT

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Download CCD File 
A, B
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
F3E
Query on F3E

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Download CCD File 
A, B
4-phenylpyrimidin-2-amine
C10 H9 N3
DMEGQEWPMXDRMO-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.601 Å
  • R-Value Free: 0.199 
  • R-Value Work: 0.169 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 45.607α = 90.00
b = 47.598β = 90.00
c = 123.853γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
PHASERphasing
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
SwitzerlandFK-16-032

Revision History 

  • Version 1.0: 2019-02-20
    Type: Initial release