Mechanism of parkin activation by PINK1.
Gladkova, C., Maslen, S.L., Skehel, J.M., Komander, D.(2018) Nature 559: 410-414
- PubMed: 29995846 
Experimental Data Snapshot
wwPDB Validation 3D Report Full Report
(2018) Nature 559: 410-414
Find similar proteins by: Sequence  |  Structure
Entity ID: 1 | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details |
E3 ubiquitin-protein ligase parkin | A | 389 | Homo sapiens | Mutation(s): 1  Gene Names: PRKN (PARK2) EC: 2.3.2.31 |
Find proteins for O60260 (Homo sapiens) Go to Gene View: PRKN Go to UniProtKB:  O60260 |
Entity ID: 2 | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details |
Polyubiquitin-B | B | 76 | Homo sapiens | Mutation(s): 1  Gene Names: UBB |
Find proteins for P0CG47 (Homo sapiens) Go to Gene View: UBB Go to UniProtKB:  P0CG47 |
Ligands 4 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN Query on ZN | A | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | ![]() |  Ligand Interaction | |
SO4 Query on SO4 | B | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | ![]() |  Ligand Interaction | |
GOL Query on GOL | A | GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | ![]() |  Ligand Interaction | |
MPD Query on MPD | A | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N | ![]() |  Ligand Interaction |
Modified Residues  2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
SEP Query on SEP | A, B | L-PEPTIDE LINKING | C3 H8 N O6 P | ![]() | SER |
3CN Query on 3CN | B | NON-POLYMER | C3 H9 N | ![]() | -- |
Length (Å) | Angle (°) |
---|---|
a = 83.931 | α = 90.00 |
b = 83.931 | β = 90.00 |
c = 105.119 | γ = 120.00 |
Software Name | Purpose |
---|---|
Aimless | data scaling |
PHENIX | refinement |
DIALS | data reduction |
PHASER | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
Medical Research Council (United Kingdom) | United Kingdom | U105192732 |
European Research Council | United Kingdom | 309756 |
European Research Council | United Kingdom | 724804 |
Michael J. Fox Foundation | United Kingdom | -- |