Download MendeleyProtein Crystallization via Sulfonatocalix[4]arene Dimethylammonium Complexation
Guagnini, F., Antonik, P.M., Rennie, M.L., Pinalli, R., Dalcanale, E., Crowley, P.B.To be published.
6GL5
Crystal Structure of dimethylated RSL - sulfonatocalix[4]arene complex
- PDB DOI: https://doi.org/10.2210/pdb6GL5/pdb
- Classification: SUGAR BINDING PROTEIN
- Organism(s): Ralstonia solanacearum
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2018-05-23 Released: 2019-06-19
- Funding Organization(s): Science Foundation Ireland
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.182
- R-Value Work: 0.162
- R-Value Observed: 0.163
This is version 2.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Fucose-binding lectin protein | 90 | Ralstonia solanacearum | Mutation(s): 0 Gene Names: E7Z57_08365, RSP795_21825, RSP822_19650, RUN39_v1_50103 |  | |
UniProt | |||||
Find proteins for A0A0S4TLR1 (Ralstonia solanacearum) Explore A0A0S4TLR1 Go to UniProtKB: A0A0S4TLR1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0S4TLR1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 6 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| T3Y (Subject of Investigation/LOI) Query on T3Y | D [auth A] J [auth B] K [auth B] P [auth C] Q [auth C] | 25,26,27,28-tetrahydroxypentacyclo[19.3.1.1~3,7~.1~9,13~.1~15,19~]octacosa-1(25),3(28),4,6,9(27),10,12,15(26),16,18,21,23-dodecaene-5,11,17,23-tetrasulfonic acid C28 H24 O16 S4 JFYBCAFLVNKHHG-UHFFFAOYSA-N |  | ||
| PG4 Query on PG4 | G [auth A] | TETRAETHYLENE GLYCOL C8 H18 O5 UWHCKJMYHZGTIT-UHFFFAOYSA-N |  | ||
| PEG Query on PEG | H [auth A], N [auth B], O [auth B], V [auth C] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | ||
| SO4 Query on SO4 | U [auth C] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| GOL Query on GOL | E [auth A] F [auth A] L [auth B] M [auth B] S [auth C] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | I [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MLY Query on MLY | A, B, C | L-PEPTIDE LINKING | C8 H18 N2 O2 |  | LYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.182
- R-Value Work: 0.162
- R-Value Observed: 0.163
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 53.92 | α = 90 |
| b = 67.57 | β = 90 |
| c = 87.75 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| Aimless | data scaling |
| PDB_EXTRACT | data extraction |
| MOSFLM | data reduction |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2019-06-19 Deposition Author(s): Guagnini, F., Rennie, M.L., Crowley, P.B.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Science Foundation Ireland | Ireland | 13/ERC/B2912 and 13/CDA/2168 |
Revision History (Full details and data files)
- Version 1.0: 2019-06-19
Type: Initial release - Version 2.0: 2020-08-05
Changes: Data collection, Database references, Derived calculations, Polymer sequence, Source and taxonomy, Structure summary - Version 2.1: 2024-01-17
Changes: Data collection, Database references, Refinement description
