6GD5

The solution structure of the LptA-Thanatin complex


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Thanatin targets the intermembrane protein complex required for lipopolysaccharide transport inEscherichia coli.

Vetterli, S.U.Zerbe, K.Muller, M.Urfer, M.Mondal, M.Wang, S.Y.Moehle, K.Zerbe, O.Vitale, A.Pessi, G.Eberl, L.Wollscheid, B.Robinson, J.A.

(2018) Sci Adv 4: eaau2634-eaau2634

  • DOI: https://doi.org/10.1126/sciadv.aau2634
  • Primary Citation of Related Structures:  
    6GD5

  • PubMed Abstract: 

    With the increasing resistance of many Gram-negative bacteria to existing classes of antibiotics, identifying new paradigms in antimicrobial discovery is an important research priority. Of special interest are the proteins required for the biogenesis of the asymmetric Gram-negative bacterial outer membrane (OM). Seven Lpt proteins (LptA to LptG) associate in most Gram-negative bacteria to form a macromolecular complex spanning the entire envelope, which transports lipopolysaccharide (LPS) molecules from their site of assembly at the inner membrane to the cell surface, powered by adenosine 5'-triphosphate hydrolysis in the cytoplasm. The periplasmic protein LptA comprises the protein bridge across the periplasm, which connects LptB 2 FGC at the inner membrane to LptD/E anchored in the OM. We show here that the naturally occurring, insect-derived antimicrobial peptide thanatin targets LptA and LptD in the network of periplasmic protein-protein interactions required to assemble the Lpt complex, leading to the inhibition of LPS transport and OM biogenesis in Escherichia coli .


  • Organizational Affiliation

    Chemistry Department, University of Zurich, Winterthurerstrasse 190, 8057 Zurich, Switzerland.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Lipopolysaccharide export system protein LptA117Escherichia coli K-12Mutation(s): 0 
Gene Names: lptAyhbNb3200JW3167
UniProt
Find proteins for P0ADV1 (Escherichia coli (strain K12))
Explore P0ADV1 
Go to UniProtKB:  P0ADV1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0ADV1
Sequence Annotations
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  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Thanatin21Podisus maculiventrisMutation(s): 0 
UniProt
Find proteins for P55788 (Podisus maculiventris)
Explore P55788 
Go to UniProtKB:  P55788
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP55788
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swiss National Science FoundationSwitzerland205320_146381
Swiss National Science FoundationSwitzerland31003A_160259

Revision History  (Full details and data files)

  • Version 1.0: 2018-11-28
    Type: Initial release
  • Version 1.1: 2019-05-08
    Changes: Data collection