6GCI

Structure of the bongkrekic acid-inhibited mitochondrial ADP/ATP carrier


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.283 
  • R-Value Work: 0.252 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

The Molecular Mechanism of Transport by the Mitochondrial ADP/ATP Carrier.

Ruprecht, J.J.King, M.S.Zogg, T.Aleksandrova, A.A.Pardon, E.Crichton, P.G.Steyaert, J.Kunji, E.R.S.

(2019) Cell 176: 435-447.e15


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
mitochondrial ADP/ATP carrier
A
315Myceliophthora thermophila (strain ATCC 42464 / BCRC 31852 / DSM 1799)Mutation(s): 1 
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Antiporters
Protein: 
Mitochondrial ADP/ATP carrier, bongkrekic acid-inhibited
Find proteins for G2QNH0 (Myceliophthora thermophila (strain ATCC 42464 / BCRC 31852 / DSM 1799))
Go to UniProtKB:  G2QNH0
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Nanobody
B
131N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CDL
Query on CDL

Download SDF File 
Download CCD File 
A
CARDIOLIPIN
DIPHOSPHATIDYL GLYCEROL; BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL
C81 H156 O17 P2
XVTUQDWPJJBEHJ-KZCWQMDCSA-L
 Ligand Interaction
P6G
Query on P6G

Download SDF File 
Download CCD File 
B
HEXAETHYLENE GLYCOL
POLYETHYLENE GLYCOL PEG400
C12 H26 O7
IIRDTKBZINWQAW-UHFFFAOYSA-N
 Ligand Interaction
BKC
Query on BKC

Download SDF File 
Download CCD File 
A
Bongkrekic acid
Bongkrek acid
C28 H38 O7
SHCXABJSXUACKU-WUTQZGRKSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.283 
  • R-Value Work: 0.252 
  • Space Group: P 32 2 1
Unit Cell:
Length (Å)Angle (°)
a = 75.650α = 90.00
b = 75.650β = 90.00
c = 295.480γ = 120.00
Software Package:
Software NamePurpose
PHASERphasing
XDSdata reduction
BUSTERrefinement
AutoPROCdata scaling
Aimlessdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (United Kingdom)United KingdomMC_UU_00015/1
European UnionBelgiumInstruct-ERIC/ESFRI
Other governmentBelgiumResearch Foundation - Flanders (FWO)

Revision History 

  • Version 1.0: 2019-01-09
    Type: Initial release
  • Version 1.1: 2019-01-16
    Type: Data collection, Database references
  • Version 1.2: 2019-02-06
    Type: Data collection, Database references