6GC3 | pdb_00006gc3

Structure of Nrd1 CID - Sen1 NIM complex

• PDB DOI: https://doi.org/10.2210/pdb6GC3/pdb
• BMRB: 34260

• Classification: TRANSCRIPTION
• Organism(s): Saccharomyces cerevisiae S288C
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2018-04-17 Released: 2020-02-05 
• Deposition Author(s): Jasnovidova, O., Kubicek, K., Stefl, R.
• Funding Organization(s): Czech Science Foundation, European Research Council (ERC)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 50 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Literature

Structure of Nrd1 CID - Sen1 NIM complex

Jasnovidova, O., Kubicek, K., Stefl, R.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 19.69 kDa 
• Atom Count: 1,360 
• Modeled Residue Count: 171 
• Deposited Residue Count: 173 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein NRD1	A	161	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: NRD1, YNL251C, N0868
UniProt
Find proteins for P53617 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P53617  Go to UniProtKB:  P53617

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Helicase SEN1	B	12	Saccharomyces cerevisiae S288C	Mutation(s): 0  EC: 3.6.4
UniProt
Find proteins for Q00416 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q00416  Go to UniProtKB:  Q00416

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 50 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2020-02-05 
Deposition Author(s): Jasnovidova, O., Kubicek, K., Stefl, R.

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Funding Organization	Location	Grant Number
Czech Science Foundation	Czech Republic	13-18344S
Czech Science Foundation	Czech Republic	15-24117S
European Research Council (ERC)		649030

Revision History  

• Version 1.0: 2020-02-05
  Type: Initial release
  
• Version 1.1: 2024-06-19
  Changes: Data collection, Database references