6GBG

Helicobacter pylori adhesin HopQ type I bound to the N-terminal domain of human CEACAM1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.263 
  • R-Value Work: 0.201 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Helicobacter pyloriadhesin HopQ disruptstransdimerization in human CEACAMs.

Moonens, K.Hamway, Y.Neddermann, M.Reschke, M.Tegtmeyer, N.Kruse, T.Kammerer, R.Mejias-Luque, R.Singer, B.B.Backert, S.Gerhard, M.Remaut, H.

(2018) EMBO J. 37: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Carcinoembryonic antigen-related cell adhesion molecule 1
D
115Homo sapiensMutation(s): 0 
Gene Names: CEACAM1 (BGP, BGP1)
Find proteins for P13688 (Homo sapiens)
Go to Gene View: CEACAM1
Go to UniProtKB:  P13688
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Outer membrane protein
A
411Helicobacter pylori (strain G27)Mutation(s): 0 
Gene Names: hopQ
Find proteins for B5Z8H1 (Helicobacter pylori (strain G27))
Go to UniProtKB:  B5Z8H1
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
BR
Query on BR

Download SDF File 
Download CCD File 
A
BROMIDE ION
Br
CPELXLSAUQHCOX-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.263 
  • R-Value Work: 0.201 
  • Space Group: P 32 2 1
Unit Cell:
Length (Å)Angle (°)
a = 94.430α = 90.00
b = 94.430β = 90.00
c = 119.700γ = 120.00
Software Package:
Software NamePurpose
xia2data reduction
PHASERphasing
REFMACrefinement
xia2data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Fonds Wetenschappelijk Onderzoek (FWO)Belgium12H8416N
Fonds Wetenschappelijk Onderzoek (FWO)BelgiumG033717N

Revision History 

  • Version 1.0: 2018-06-27
    Type: Initial release
  • Version 1.1: 2018-07-11
    Type: Data collection, Database references