6GB4

The Structure of variant S328A of the Mo-insertase domain Cnx1E from Arabidopsis thaliana in complex with AMP and molybdate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.648 Å
  • R-Value Free: 0.218 
  • R-Value Work: 0.193 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

The functional principle of eukaryotic molybdenum insertases.

Krausze, J.Hercher, T.W.Zwerschke, D.Kirk, M.L.Blankenfeldt, W.Mendel, R.R.Kruse, T.

(2018) Biochem. J. 475: 1739-1753


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Molybdopterin biosynthesis protein CNX1
A
460Arabidopsis thalianaMutation(s): 1 
Gene Names: CNX1
Find proteins for Q39054 (Arabidopsis thaliana)
Go to UniProtKB:  Q39054
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MOO
Query on MOO

Download SDF File 
Download CCD File 
A
MOLYBDATE ION
MOLYBDATE
Mo O4
MEFBJEMVZONFCJ-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

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Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
AMP
Query on AMP

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Download CCD File 
A
ADENOSINE MONOPHOSPHATE
C10 H14 N5 O7 P
UDMBCSSLTHHNCD-KQYNXXCUSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
CSX
Query on CSX
A
L-PEPTIDE LINKINGC3 H7 N O3 SCYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.648 Å
  • R-Value Free: 0.218 
  • R-Value Work: 0.193 
  • Space Group: I 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 65.310α = 90.00
b = 122.580β = 90.00
c = 133.000γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
Cootmodel building
autoBUSTERrefinement
STARANISOdata scaling
BUSTERrefinement
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2018-04-13 
  • Released Date: 2018-07-18 
  • Deposition Author(s): Krausze, J.

Revision History 

  • Version 1.0: 2018-07-18
    Type: Initial release