6G7Z

Lariat-capping ribozyme with a shortened DP2 stem loop


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.33595 Å
  • R-Value Free: 0.304 
  • R-Value Work: 0.235 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Lariat-capping ribozyme with a shortened DP2 stem loop

Masquida, B.Meyer, M.Olieric, V.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsLengthOrganism
Lariat-capping ribozymeA132Didymium iridis
Entity ID: 2
MoleculeChainsLengthOrganism
Lariat-capping ribozymeB54Didymium iridis
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MG
Query on MG

Download SDF File 
Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
MES
Query on MES

Download SDF File 
Download CCD File 
B
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.33595 Å
  • R-Value Free: 0.304 
  • R-Value Work: 0.235 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 59.945α = 90.00
b = 88.791β = 90.00
c = 110.038γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
Cootmodel building
SHELXSphasing
REFMACrefinement
XDSdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-12-05
    Type: Initial release