6G72

Mouse mitochondrial complex I in the deactive state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Cryo-EM structures of complex I from mouse heart mitochondria in two biochemically defined states.

Agip, A.A.Blaza, J.N.Bridges, H.R.Viscomi, C.Rawson, S.Muench, S.P.Hirst, J.

(2018) Nat Struct Mol Biol 25: 548-556

  • DOI: 10.1038/s41594-018-0073-1
  • Primary Citation of Related Structures:  
    6G2J, 6G72

  • PubMed Abstract: 
  • Complex I (NADH:ubiquinone oxidoreductase) uses the reducing potential of NADH to drive protons across the energy-transducing inner membrane and power oxidative phosphorylation in mammalian mitochondria. Recent cryo-EM analyses have produced near-com ...

    Complex I (NADH:ubiquinone oxidoreductase) uses the reducing potential of NADH to drive protons across the energy-transducing inner membrane and power oxidative phosphorylation in mammalian mitochondria. Recent cryo-EM analyses have produced near-complete models of all 45 subunits in the bovine, ovine and porcine complexes and have identified two states relevant to complex I in ischemia-reperfusion injury. Here, we describe the 3.3-Å structure of complex I from mouse heart mitochondria, a biomedically relevant model system, in the 'active' state. We reveal a nucleotide bound in subunit NDUFA10, a nucleoside kinase homolog, and define mechanistically critical elements in the mammalian enzyme. By comparisons with a 3.9-Å structure of the 'deactive' state and with known bacterial structures, we identify differences in helical geometry in the membrane domain that occur upon activation or that alter the positions of catalytically important charged residues. Our results demonstrate the capability of cryo-EM analyses to challenge and develop mechanistic models for mammalian complex I.


    Organizational Affiliation

    The Medical Research Council Mitochondrial Biology Unit, University of Cambridge, Cambridge, UK. jh@mrc-mbu.cam.ac.uk.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 3A115Mus musculusMutation(s): 0 
Gene Names: Mtnd3mt-Nd3Nd3
EC: 1.6.5.3 (PDB Primary Data), 7.1.1.2 (UniProt)
Find proteins for P03899 (Mus musculus)
Explore P03899 
Go to UniProtKB:  P03899
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 10
MoleculeChainsSequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 6J172Mus musculusMutation(s): 0 
Gene Names: Mtnd6mt-Nd6Nd6
EC: 1.6.5.3 (PDB Primary Data), 7.1.1.2 (UniProt)
Find proteins for P03925 (Mus musculus)
Explore P03925 
Go to UniProtKB:  P03925
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 11
MoleculeChainsSequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 4LK98Mus musculusMutation(s): 0 
Gene Names: Mtnd4lmt-Nd4lNd4l
EC: 1.6.5.3 (PDB Primary Data), 7.1.1.2 (UniProt)
Find proteins for P03903 (Mus musculus)
Explore P03903 
Go to UniProtKB:  P03903
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 12
MoleculeChainsSequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 5L607Mus musculusMutation(s): 0 
Gene Names: Mtnd5mt-Nd5Nd5
EC: 1.6.5.3 (PDB Primary Data), 7.1.1.2 (UniProt)
Find proteins for P03921 (Mus musculus)
Explore P03921 
Go to UniProtKB:  P03921
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 13
MoleculeChainsSequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 4M459Mus musculusMutation(s): 0 
Gene Names: Mtnd4mt-Nd4Nd4
EC: 1.6.5.3 (PDB Primary Data), 7.1.1.2 (UniProt)
Find proteins for P03911 (Mus musculus)
Explore P03911 
Go to UniProtKB:  P03911
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 14
MoleculeChainsSequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 2N345Mus musculusMutation(s): 0 
Gene Names: Mtnd2mt-Nd2Nd2
EC: 1.6.5.3 (PDB Primary Data), 7.1.1.2 (UniProt)
Find proteins for P03893 (Mus musculus)
Explore P03893 
Go to UniProtKB:  P03893
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 15
MoleculeChainsSequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrialO355Mus musculusMutation(s): 0 
Gene Names: Ndufa10
Find proteins for Q99LC3 (Mus musculus)
Explore Q99LC3 
Go to UniProtKB:  Q99LC3
NIH Common Fund Data Resources
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 16
MoleculeChainsSequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrialP377Mus musculusMutation(s): 0 
Gene Names: Ndufa9
Find proteins for Q9DC69 (Mus musculus)
Explore Q9DC69 
Go to UniProtKB:  Q9DC69
NIH Common Fund Data Resources
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 17
MoleculeChainsSequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrialQ175Mus musculusMutation(s): 0 
Gene Names: Ndufs4
Find proteins for Q9CXZ1 (Mus musculus)
Explore Q9CXZ1 
Go to UniProtKB:  Q9CXZ1
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 18
MoleculeChainsSequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrialR116Mus musculusMutation(s): 0 
Gene Names: Ndufs6Ip13
Find proteins for P52503 (Mus musculus)
Explore P52503 
Go to UniProtKB:  P52503
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 19
MoleculeChainsSequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2S99Mus musculusMutation(s): 0 
Gene Names: Ndufa2
Find proteins for Q9CQ75 (Mus musculus)
Explore Q9CQ75 
Go to UniProtKB:  Q9CQ75
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrialB224Mus musculusMutation(s): 0 
Gene Names: Ndufs7
EC: 1.6.5.3 (PDB Primary Data), 1.6.99.3 (PDB Primary Data), 7.1.1.2 (UniProt)
Find proteins for Q9DC70 (Mus musculus)
Explore Q9DC70 
Go to UniProtKB:  Q9DC70
NIH Common Fund Data Resources
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 20
MoleculeChainsSequence LengthOrganismDetailsImage
Acyl carrier protein, mitochondrialTU156Mus musculusMutation(s): 0 
Gene Names: Ndufab1
Find proteins for Q9CR21 (Mus musculus)
Explore Q9CR21 
Go to UniProtKB:  Q9CR21
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 21
MoleculeChainsSequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5V116Mus musculusMutation(s): 0 
Gene Names: Ndufa5
Find proteins for Q9CPP6 (Mus musculus)
Explore Q9CPP6 
Go to UniProtKB:  Q9CPP6
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 22
MoleculeChainsSequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6W131Mus musculusMutation(s): 0 
Gene Names: Ndufa6
Find proteins for Q9CQZ5 (Mus musculus)
Explore Q9CQZ5 
Go to UniProtKB:  Q9CQZ5
NIH Common Fund Data Resources
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 23
MoleculeChainsSequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8X172Mus musculusMutation(s): 0 
Gene Names: Ndufa8
Find proteins for Q9DCJ5 (Mus musculus)
Explore Q9DCJ5 
Go to UniProtKB:  Q9DCJ5
NIH Common Fund Data Resources
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 24
MoleculeChainsSequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11Y143Mus musculusMutation(s): 0 
Gene Names: Ndufa11
Find proteins for G5E814 (Mus musculus)
Explore G5E814 
Go to UniProtKB:  G5E814
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 25
MoleculeChainsSequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13Z144Mus musculusMutation(s): 0 
Gene Names: Ndufa13Grim19
Find proteins for Q9ERS2 (Mus musculus)
Explore Q9ERS2 
Go to UniProtKB:  Q9ERS2
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 26
MoleculeChainsSequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1a70Mus musculusMutation(s): 0 
Gene Names: Ndufa1
Find proteins for O35683 (Mus musculus)
Explore O35683 
Go to UniProtKB:  O35683
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 27
MoleculeChainsSequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3b84Mus musculusMutation(s): 0 
Gene Names: Ndufa3
Find proteins for Q9CQ91 (Mus musculus)
Explore Q9CQ91 
Go to UniProtKB:  Q9CQ91
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 28
MoleculeChainsSequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrialc76Mus musculusMutation(s): 0 
Gene Names: Ndufc1
Find proteins for Q9CQY9 (Mus musculus)
Explore Q9CQY9 
Go to UniProtKB:  Q9CQY9
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 29
MoleculeChainsSequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 subunit C2d120Mus musculusMutation(s): 0 
Gene Names: Ndufc2
Find proteins for Q9CQ54 (Mus musculus)
Explore Q9CQ54 
Go to UniProtKB:  Q9CQ54
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrialC263Mus musculusMutation(s): 0 
Gene Names: Ndufs3
EC: 1.6.5.3 (PDB Primary Data), 1.6.99.3 (PDB Primary Data), 7.1.1.2 (UniProt)
Find proteins for Q9DCT2 (Mus musculus)
Explore Q9DCT2 
Go to UniProtKB:  Q9DCT2
NIH Common Fund Data Resources
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 30
MoleculeChainsSequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] iron-sulfur protein 5e106Mus musculusMutation(s): 0 
Gene Names: Ndufs5
Find proteins for Q99LY9 (Mus musculus)
Explore Q99LY9 
Go to UniProtKB:  Q99LY9
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 31
MoleculeChainsSequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1f57Mus musculusMutation(s): 0 
Gene Names: Ndufb1
Find proteins for P0DN34 (Mus musculus)
Explore P0DN34 
Go to UniProtKB:  P0DN34
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 32
MoleculeChainsSequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrialg151Mus musculusMutation(s): 0 
Gene Names: Ndufb11Np15
Find proteins for O09111 (Mus musculus)
Explore O09111 
Go to UniProtKB:  O09111
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 33
MoleculeChainsSequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrialh189Mus musculusMutation(s): 0 
Gene Names: Ndufb5
Find proteins for Q9CQH3 (Mus musculus)
Explore Q9CQH3 
Go to UniProtKB:  Q9CQH3
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 34
MoleculeChainsSequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6i128Mus musculusMutation(s): 0 
Gene Names: Ndufb6Gm137
Find proteins for Q3UIU2 (Mus musculus)
Explore Q3UIU2 
Go to UniProtKB:  Q3UIU2
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 35
MoleculeChainsSequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrialj105Mus musculusMutation(s): 0 
Gene Names: Ndufb2
Find proteins for Q9CPU2 (Mus musculus)
Explore Q9CPU2 
Go to UniProtKB:  Q9CPU2
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 36
MoleculeChainsSequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3k104Mus musculusMutation(s): 0 
Gene Names: Ndufb3
Find proteins for Q9CQZ6 (Mus musculus)
Explore Q9CQZ6 
Go to UniProtKB:  Q9CQZ6
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 37
MoleculeChainsSequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondriall186Mus musculusMutation(s): 0 
Gene Names: Ndufb8
Find proteins for Q9D6J5 (Mus musculus)
Explore Q9D6J5 
Go to UniProtKB:  Q9D6J5
NIH Common Fund Data Resources
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 38
MoleculeChainsSequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4m129Mus musculusMutation(s): 0 
Gene Names: Ndufb4
Find proteins for Q9CQC7 (Mus musculus)
Explore Q9CQC7 
Go to UniProtKB:  Q9CQC7
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 39
MoleculeChainsSequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9n179Mus musculusMutation(s): 0 
Gene Names: Ndufb9
Find proteins for Q9CQJ8 (Mus musculus)
Explore Q9CQJ8 
Go to UniProtKB:  Q9CQJ8
NIH Common Fund Data Resources
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrialD463Mus musculusMutation(s): 0 
Gene Names: Ndufs2
EC: 1.6.5.3 (PDB Primary Data), 1.6.99.3 (PDB Primary Data), 7.1.1.2 (UniProt)
Find proteins for Q91WD5 (Mus musculus)
Explore Q91WD5 
Go to UniProtKB:  Q91WD5
NIH Common Fund Data Resources
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 40
MoleculeChainsSequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7o137Mus musculusMutation(s): 0 
Gene Names: Ndufb7
Find proteins for Q9CR61 (Mus musculus)
Explore Q9CR61 
Go to UniProtKB:  Q9CR61
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 41
MoleculeChainsSequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10p176Mus musculusMutation(s): 0 
Gene Names: Ndufb10
Find proteins for Q9DCS9 (Mus musculus)
Explore Q9DCS9 
Go to UniProtKB:  Q9DCS9
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 42
MoleculeChainsSequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12q145Mus musculusMutation(s): 0 
Gene Names: Ndufa12
Find proteins for Q7TMF3 (Mus musculus)
Explore Q7TMF3 
Go to UniProtKB:  Q7TMF3
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 43
MoleculeChainsSequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7r113Mus musculusMutation(s): 0 
Gene Names: Ndufa7
Find proteins for Q9Z1P6 (Mus musculus)
Explore Q9Z1P6 
Go to UniProtKB:  Q9Z1P6
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 44
MoleculeChainsSequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrials104Mus musculusMutation(s): 0 
Gene Names: Ndufv3
Find proteins for Q8BK30 (Mus musculus)
Explore Q8BK30 
Go to UniProtKB:  Q8BK30
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrialE248Mus musculusMutation(s): 0 
Gene Names: Ndufv2
EC: 1.6.5.3 (PDB Primary Data), 1.6.99.3 (PDB Primary Data), 7.1.1.2 (UniProt)
Find proteins for Q9D6J6 (Mus musculus)
Explore Q9D6J6 
Go to UniProtKB:  Q9D6J6
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrialF464Mus musculusMutation(s): 0 
Gene Names: Ndufv1
EC: 1.6.5.3 (PDB Primary Data), 1.6.99.3 (PDB Primary Data), 7.1.1.2 (UniProt)
Find proteins for Q91YT0 (Mus musculus)
Explore Q91YT0 
Go to UniProtKB:  Q91YT0
NIH Common Fund Data Resources
IMPC  MGI:107851
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrialG727Mus musculusMutation(s): 0 
Gene Names: Ndufs1
EC: 1.6.5.3 (PDB Primary Data), 1.6.99.3 (PDB Primary Data), 7.1.1.2 (UniProt)
Find proteins for Q91VD9 (Mus musculus)
Explore Q91VD9 
Go to UniProtKB:  Q91VD9
NIH Common Fund Data Resources
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 1H318Mus musculusMutation(s): 0 
Gene Names: Mtnd1mt-Nd1Nd1
EC: 1.6.5.3 (PDB Primary Data), 7.1.1.2 (UniProt)
Find proteins for P03888 (Mus musculus)
Explore P03888 
Go to UniProtKB:  P03888
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 9
MoleculeChainsSequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrialI212Mus musculusMutation(s): 0 
Gene Names: Ndufs8
EC: 1.6.5.3 (PDB Primary Data), 1.6.99.3 (PDB Primary Data), 7.1.1.2 (UniProt)
Find proteins for Q8K3J1 (Mus musculus)
Explore Q8K3J1 
Go to UniProtKB:  Q8K3J1
NIH Common Fund Data Resources
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Small Molecules
Ligands 7 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NDP
Query on NDP

Download CCD File 
P
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
C21 H30 N7 O17 P3
ACFIXJIJDZMPPO-NNYOXOHSSA-N
 Ligand Interaction
EHZ
Query on EHZ

Download CCD File 
T, U
~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{S})-3-oxidanyltetradecanethioate
C25 H49 N2 O9 P S
JYSKQPQRUCZFIQ-REWPJTCUSA-N
 Ligand Interaction
FMN
Query on FMN

Download CCD File 
F
FLAVIN MONONUCLEOTIDE
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
 Ligand Interaction
ADP
Query on ADP

Download CCD File 
O
ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
 Ligand Interaction
SF4
Query on SF4

Download CCD File 
B, F, G, I
IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-VKOJMFJBAC
 Ligand Interaction
FES
Query on FES

Download CCD File 
E, G
FE2/S2 (INORGANIC) CLUSTER
Fe2 S2
NIXDOXVAJZFRNF-UHFFFAOYSA-N
 Ligand Interaction
ZN
Query on ZN

Download CCD File 
R
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  4 Unique
IDChainsTypeFormula2D DiagramParent
FME
Query on FME
AL-PEPTIDE LINKINGC6 H11 N O3 SMET
AYA
Query on AYA
bL-PEPTIDE LINKINGC5 H9 N O3ALA
SAC
Query on SAC
iL-PEPTIDE LINKINGC5 H9 N O4SER
2MR
Query on 2MR
DL-PEPTIDE LINKINGC8 H18 N4 O2ARG
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (United Kingdom)United KingdomMC_U105663141
Medical Research Council (United Kingdom)United KingdomMC_UU_00015/2
Medical Research Council (United Kingdom)United KingdomMC_UU_00015/5

Revision History 

  • Version 1.0: 2018-06-06
    Type: Initial release
  • Version 1.1: 2018-07-04
    Changes: Data collection, Database references
  • Version 1.2: 2018-08-01
    Changes: Data collection, Database references
  • Version 1.3: 2018-10-03
    Changes: Data collection, Experimental preparation
  • Version 1.4: 2019-12-11
    Changes: Other