6G1H

Amine Dehydrogenase from Petrotoga mobilis; open form

• PDB DOI: https://doi.org/10.2210/pdb6G1H/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Petrotoga mobilis SJ95
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2018-03-21 Released: 2019-03-27 
• Deposition Author(s): Beloti, L., Frese, A., Mayol, O., Vergne-Vaxelaire, C., Grogan, G.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.79 Å
• R-Value Free: 0.196 
• R-Value Work: 0.159 
• R-Value Observed: 0.161 

Literature

A family of native amine dehydrogenases for the asymmetric reductive amination of ketones

Mayol, O., Bastard, K., Beloti, L., Frese, A., Turkenburg, J.P., Petit, J.-L., Mariage, A., Debard, A., Pellouin, V., Perret, A., de Berardinis, V., Zaparucha, A., Grogan, G., Vergne-Vaxelaire, C.

(2019) Nat Catal 

• DOI: https://doi.org/10.1038/s41929-019-0249-z

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 38.49 kDa 
• Atom Count: 2,988 
• Modelled Residue Count: 343 
• Deposited Residue Count: 345 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Dihydrodipicolinate reductase	A	345	Petrotoga mobilis SJ95	Mutation(s): 0  Gene Names: Pmob_1166
UniProt
Find proteins for A9BHL2 (Petrotoga mobilis (strain DSM 10674 / SJ95)) Explore A9BHL2  Go to UniProtKB:  A9BHL2

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAD	B [auth A]	NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N
EDO	C [auth A], D [auth A], E [auth A]	1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.79 Å
• R-Value Free: 0.196 
• R-Value Work: 0.159 
• R-Value Observed: 0.161 
• Space Group: P 6₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 82.038	α = 90
b = 82.038	β = 90
c = 217.409	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
SCALA	data scaling
CRANK	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2019-03-27 
Deposition Author(s): Beloti, L., Frese, A., Mayol, O., Vergne-Vaxelaire, C., Grogan, G.

Revision History  

• Version 1.0: 2019-03-27
  Type: Initial release