6G0K

Crystal structure of Enterococcus faecium D63r Penicillin-Binding protein 5 (PBP5fm)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.198 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural basis of inactivation of Enterococcus faecium penicillin binding protein 5 by ceftobiprole.

Sauvage, E.El Gachi, M.Kerff, F.Herman, R.Verlaine, O.Amoroso, A.Page, M.G.P.Joris, B.Charlier, P.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Low affinity penicillin-binding protein 5 (PBP5)
A, B, C
649Enterococcus faeciumMutation(s): 0 
Gene Names: pbp5
Find proteins for Q47759 (Enterococcus faecium)
Go to UniProtKB:  Q47759
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B, C
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.198 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 79.842α = 90.00
b = 128.852β = 93.88
c = 236.250γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
AMoREphasing
XDSdata reduction
XSCALEdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2019-04-10
    Type: Initial release