6FZR

Crystal structure of scFv-SM3 in complex with compound 2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.187 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

The architecture behind the Tn antigen: Water sculpts their distinctive arrangement

Bermejo, I.A.Usabiaga, I.Companon, I.Castro-Lopez, J.Insausti, A.Fernandez, J.A.Avenoza, A.Busto, J.H.Jimenez-Barbero, J.Asensio, J.L.Jimenez-Oses, G.Peregrina, J.M.Hurtado-Guerrero, R.Cocinero, E.J.Corzana, F.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
scFv-SM3
H
244N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Mucin-1
P
6Homo sapiensMutation(s): 0 
Gene Names: MUC1 (PUM)
Find proteins for P15941 (Homo sapiens)
Go to Gene View: MUC1
Go to UniProtKB:  P15941
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EEQ
Query on EEQ

Download SDF File 
Download CCD File 
P
2-fluoranyl-~{N}-[(2~{S},3~{R},4~{R},5~{R},6~{R})-6-(hydroxymethyl)-2,4,5-tris(oxidanyl)oxan-3-yl]ethanamide
C8 H14 F N O6
LMPCEKTVFVQIPT-VDUCJHRSSA-N
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
H
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.187 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 35.274α = 90.00
b = 69.431β = 90.00
c = 90.778γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
MOLREPphasing
SCALAdata scaling
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
MICINNSpain, CTQ2013-44367-C2-2-P
MICINNSpainBFU2016-75633-P

Revision History 

  • Version 1.0: 2019-02-20
    Type: Initial release