6FYU

Structure of H7(A/Shanghai/2/2013) Influenza Hemagglutinin in complex SD36


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.643 Å
  • R-Value Free: 0.216 
  • R-Value Work: 0.186 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Universal protection against influenza infection by a multidomain antibody to influenza hemagglutinin.

Laursen, N.S.Friesen, R.H.E.Zhu, X.Jongeneelen, M.Blokland, S.Vermond, J.van Eijgen, A.Tang, C.van Diepen, H.Obmolova, G.van der Neut Kolfschoten, M.Zuijdgeest, D.Straetemans, R.Hoffman, R.M.B.Nieusma, T.Pallesen, J.Turner, H.L.Bernard, S.M.Ward, A.B.Luo, J.Poon, L.L.M.Tretiakova, A.P.Wilson, J.M.Limberis, M.P.Vogels, R.Brandenburg, B.Kolkman, J.A.Wilson, I.A.

(2018) Science 362: 598-602


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Hemaggluinin HA1
A, D, G
321Influenza A virusMutation(s): 0 
Gene Names: HA
Find proteins for A0A097PHH8 (Influenza A virus)
Go to UniProtKB:  A0A097PHH8
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Hemagglutinin
B, H
183Influenza A virusMutation(s): 0 
Gene Names: HA
Find proteins for A0A097PHH8 (Influenza A virus)
Go to UniProtKB:  A0A097PHH8
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Single domain antibody SD36
C, F, I
122N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
Hemagglutinin
E
185Influenza A virusMutation(s): 0 
Gene Names: HA
Find proteins for A0A097PHH8 (Influenza A virus)
Go to UniProtKB:  A0A097PHH8
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
D, E, G
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
A, B, D, E, G, H
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
NAG
Query on NAG
E
D-SACCHARIDEC8 H15 N O6

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Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.643 Å
  • R-Value Free: 0.216 
  • R-Value Work: 0.186 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 101.424α = 90.00
b = 128.159β = 90.00
c = 192.104γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
XDSdata reduction
PHENIXrefinement
XSCALEdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of HealthUnited StatesR56 AI117675
National Institutes of HealthUnited StatesR56 AI127371

Revision History 

  • Version 1.0: 2018-11-07
    Type: Initial release
  • Version 1.1: 2018-11-14
    Type: Data collection, Database references