6FWF

Low resolution structure of Neisseria meningitidis qNOR


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.2 Å
  • R-Value Free: 0.373 
  • R-Value Work: 0.333 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Characterization of the quinol-dependent nitric oxide reductase from the pathogen Neisseria meningitidis, an electrogenic enzyme.

Gonska, N.Young, D.Yuki, R.Okamoto, T.Hisano, T.Antonyuk, S.Hasnain, S.S.Muramoto, K.Shiro, Y.Tosha, T.Adelroth, P.

(2018) Sci Rep 8: 3637


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Nitric-oxide reductase
A
751Neisseria meningitidis (strain alpha14)Mutation(s): 0 
Gene Names: norB
EC: 1.7.99.7
Find proteins for C6S880 (Neisseria meningitidis (strain alpha14))
Go to UniProtKB:  C6S880
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

Download SDF File 
Download CCD File 
A
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
HEM
Query on HEM

Download SDF File 
Download CCD File 
A
PROTOPORPHYRIN IX CONTAINING FE
HEME
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
 Ligand Interaction
FE
Query on FE

Download SDF File 
Download CCD File 
A
FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.2 Å
  • R-Value Free: 0.373 
  • R-Value Work: 0.333 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 93.682α = 90.00
b = 123.096β = 90.00
c = 130.845γ = 90.00
Software Package:
Software NamePurpose
Aimlessdata scaling
XDSdata reduction
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-03-14
    Type: Initial release