6FVB

Structure of Lph2 , a novel bidirectional nuclear transport receptor in S. cerevisiae

PDB DOI: https://doi.org/10.2210/pdb6FVB/pdb

Classification: NUCLEAR PROTEIN
Organism(s): Saccharomyces cerevisiae S288C
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2018-03-01 Released: 2019-09-11
Deposition Author(s): Vera Rodriguez, A., Huyton, T., Gorlich, D.
Funding Organization(s): German Research Foundation

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.30 Å
R-Value Free: 0.282
R-Value Work: 0.237
R-Value Observed: 0.239

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structure of Lph2 , a novel bidirectional nuclear transport receptor in S. cerevisiae

Vera Rodriguez, A., Huyton, T., Gorlich, D.

To be published.

Macromolecule Content

Total Structure Weight: 120.45 kDa
Atom Count: 8,189
Modelled Residue Count: 1,001
Deposited Residue Count: 1,031
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Importin beta-like protein KAP120	A	1,031	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: KAP120, YPL125W
UniProt
Find proteins for Q02932 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q02932 Go to UniProtKB: Q02932
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q02932
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.30 Å
R-Value Free: 0.282
R-Value Work: 0.237
R-Value Observed: 0.239
Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 139.851	α = 90
b = 139.851	β = 90
c = 148.15	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
CRANK2	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2019-09-11

Deposition Author(s):

Vera Rodriguez, A.

Funding Organization	Location	Grant Number
German Research Foundation	Germany	SFB860

Revision History (Full details and data files)

Version 1.0: 2019-09-11
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.