6FU7

ATP phosphoribosyltransferase (HisZG ATPPRT) from Psychrobacter arcticus in complex with PRATP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.31 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.212 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Catalytic and Anticatalytic Snapshots of a Short-Form ATP Phosphoribosyltransferase

Alphey, M.S.Fisher, G.Hirschi, J.S.Stroek, R.Ge, Y.Gould, E.R.Czekster, C.M.Liu, H.Florence, G.J.Vetticatt, M.J.Naismith, J.H.da Silva, R.G.

(2018) Acs Catalysis --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ATP phosphoribosyltransferase regulatory subunit
A, B
388Psychrobacter arcticus (strain DSM 17307 / 273-4)Mutation(s): 0 
Gene Names: hisZ
Find proteins for Q4FTX3 (Psychrobacter arcticus (strain DSM 17307 / 273-4))
Go to UniProtKB:  Q4FTX3
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
ATP phosphoribosyltransferase
C, D
232Psychrobacter arcticus (strain DSM 17307 / 273-4)Mutation(s): 0 
Gene Names: hisG
EC: 2.4.2.17
Find proteins for Q4FQF7 (Psychrobacter arcticus (strain DSM 17307 / 273-4))
Go to UniProtKB:  Q4FQF7
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
B, C, D
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
MG
Query on MG

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Download CCD File 
B
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
PRT
Query on PRT

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Download CCD File 
C, D
PHOSPHORIBOSYL ATP
[[(2~{R},3~{S},4~{R},5~{R})-5-[6-azanylidene-1-[(2~{R},3~{R},4~{S},5~{R})-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)oxolan-2-yl]purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate
C15 H25 N5 O20 P4
RKNHJBVBFHDXGR-DNVSJNHSSA-N
 Ligand Interaction
TRS
Query on TRS

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Download CCD File 
D
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.31 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.212 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 101.820α = 90.00
b = 146.780β = 101.77
c = 94.460γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
Aimlessdata scaling
PDB_EXTRACTdata extraction
MOLREPphasing
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research CouncilUnited KingdomBB/M010996/1

Revision History 

  • Version 1.0: 2018-10-24
    Type: Initial release