6FSP | pdb_00006fsp

Crystal structure of APRT from Thermus thermophilus

PDB DOI: https://doi.org/10.2210/pdb6FSP/pdb

Classification: TRANSFERASE
Organism(s): Thermus thermophilus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2018-02-20 Released: 2019-03-20
Deposition Author(s): Timofeev, V.I., Sinitsyna, E.V., Kostromina, M.A., Muravieva, T.I., Makarov, D.A., Mikheeva, O.O., Kuranova, I.P., Esipov, R.S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free:
0.271 (Depositor), 0.355 (DCC)
R-Value Work:
0.248 (Depositor), 0.290 (DCC)
R-Value Observed:
0.236 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of APRT from Thermus thermophilus

Timofeev, V.I., Sinitsyna, E.V., Kostromina, M.A., Muravieva, T.I., Makarov, D.A., Mikheeva, O.O., Kuranova, I.P., Esipov, R.S.

To be published.

Macromolecule Content

Total Structure Weight: 110.55 kDa
Atom Count: 7,731
Modeled Residue Count: 1,039
Deposited Residue Count: 1,044
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PRPP-binding protein, adenine/guanine phosphoribosyltransferase	A, B, C, D, E A, B, C, D, E, F	174	Thermus thermophilus	Mutation(s): 0 Gene Names: TtJL18_0431
UniProt
Find proteins for Q5SHW6 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHW6 Go to UniProtKB: Q5SHW6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q5SHW6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free: 0.271 (Depositor), 0.355 (DCC)
R-Value Work: 0.248 (Depositor), 0.290 (DCC)
R-Value Observed: 0.236 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 69.86	α = 90
b = 82.16	β = 102.58
c = 91.39	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
iMOSFLM	data reduction
SCALA	data scaling
PHASER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2019-03-20

Deposition Author(s):

Sinitsyna, E.V.

Kostromina, M.A.

Muravieva, T.I.

Revision History (Full details and data files)

Version 1.0: 2019-03-20
Type: Initial release
Version 1.1: 2024-05-08
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.