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Download EndnoteThe catalytic domain of UGGT, the eukaryotic glycoprotein secretion checkpoint.
Roversi, P., Zitzmann, N., Alonzi, D.S., Hill, J.C., Lipp, C.B., Le Cornu, J.D.To be published.
6FSN
Catalytic domain of UDP-Glucose Glycoprotein Glucosyltransferase from Chaetomium thermophilum in complex with UDP-glucose (conformation 1)
- DOI: 10.2210/pdb6FSN/pdb
- Classification: TRANSFERASE
- Organism(s): Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
- Expression System: Homo sapiens
- Deposited: 2018-02-19 Released: 2019-03-20
- Funding Organization(s): Wellcome Trust
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.19 Å
- R-Value Free: 0.227
- R-Value Work: 0.211
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| UDP-glucose-glycoprotein glucosyltransferase-like protein | A | 299 | Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) | Mutation(s): 0 |
Find proteins for G0SB58 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Go to UniProtKB: G0SB58 | ||||
Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| UPG Query on UPG | A | URIDINE-5'-DIPHOSPHATE-GLUCOSE URIDINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE ESTER C15 H24 N2 O17 P2 HSCJRCZFDFQWRP-JZMIEXBBSA-N |  | Ligand Interaction | |
| CA Query on CA | A | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | Ligand Interaction | |
| EDO Query on EDO | A | 1,2-ETHANEDIOL ETHYLENE GLYCOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
| PGE Query on PGE | A | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N |  | Ligand Interaction | |
| NAG Query on NAG | A | N-ACETYL-D-GLUCOSAMINE C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.19 Å
- R-Value Free: 0.227
- R-Value Work: 0.211
- Space Group: H 3
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 118.832 | α = 90.00 |
| b = 118.832 | β = 90.00 |
| c = 68.754 | γ = 120.00 |
| Software Name | Purpose |
|---|---|
| BUSTER | refinement |
| MOLREP | phasing |
| AutoPROC | data scaling |
| XDS | data reduction |
Entry History & Funding Information
Deposition Data
- Deposited Date: 2018-02-19
- Released Date: 2019-03-20
- Deposition Author(s): Roversi, P., Le Cornu, J.D., Hill, J., Alonzi, D.S., Zitzmann, N.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Wellcome Trust | United Kingdom | 106272/Z/14/Z |
