Download MendeleyThe catalytic domain of UGGT, the eukaryotic glycoprotein secretion checkpoint.
Roversi, P., Zitzmann, N., Alonzi, D.S., Hill, J.C., Lipp, C.B., Le Cornu, J.D.To be published.
6FSN
Catalytic domain of UDP-Glucose Glycoprotein Glucosyltransferase from Chaetomium thermophilum in complex with UDP-glucose (conformation 1)
- PDB DOI: 10.2210/pdb6FSN/pdb
- Classification: TRANSFERASE
- Organism(s): Chaetomium thermophilum
- Expression System: Homo sapiens
- Mutation(s): No
- Deposited: 2018-02-19 Released: 2019-03-20
- Funding Organization(s): Wellcome Trust
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.19 Å
- R-Value Free: 0.227
- R-Value Work: 0.211
- R-Value Observed: 0.211
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| UDP-glucose-glycoprotein glucosyltransferase-like protein | A | 299 | Chaetomium thermophilum | Mutation(s): 0 Gene Names: CTHT_0048990 |  |
UniProt | |||||
Find proteins for G0SB58 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0SB58 Go to UniProtKB: G0SB58 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | G0SB58 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| UPG (Subject of Investigation/LOI) Query on UPG | D [auth A] | URIDINE-5'-DIPHOSPHATE-GLUCOSE C15 H24 N2 O17 P2 HSCJRCZFDFQWRP-JZMIEXBBSA-N |  | Ligand Interaction | |
| NAG Query on NAG | B [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | Ligand Interaction | |
| PGE Query on PGE | F [auth A] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N |  | Ligand Interaction | |
| EDO Query on EDO | E [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
| CA (Subject of Investigation/LOI) Query on CA | C [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.19 Å
- R-Value Free: 0.227
- R-Value Work: 0.211
- R-Value Observed: 0.211
- Space Group: H 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 118.832 | α = 90 |
| b = 118.832 | β = 90 |
| c = 68.754 | γ = 120 |
| Software Name | Purpose |
|---|---|
| BUSTER | refinement |
| XDS | data reduction |
| autoPROC | data scaling |
| MOLREP | phasing |
Entry History & Funding Information
Deposition Data
- Deposited Date: 2018-02-19
- Released Date: 2019-03-20 Deposition Author(s): Roversi, P., Le Cornu, J.D., Hill, J., Alonzi, D.S., Zitzmann, N.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Wellcome Trust | United Kingdom | 106272/Z/14/Z |
Revision History (Full details and data files)
- Version 1.0: 2019-03-20
Type: Initial release - Version 1.1: 2020-07-08
Changes: Data collection - Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Refinement description, Structure summary
