6FPX

Structure of S. pombe Mmi1 in complex with 11-mer RNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.97 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.200 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

A low-complexity region in the YTH domain protein Mmi1 enhances RNA binding.

Stowell, J.A.W.Wagstaff, J.L.Hill, C.H.Yu, M.McLaughlin, S.H.Freund, S.M.V.Passmore, L.A.

(2018) J. Biol. Chem. 293: 9210-9222


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
YTH domain-containing protein mmi1
A, C, E
192Schizosaccharomyces pombe (strain 972 / ATCC 24843)Mutation(s): 0 
Gene Names: mmi1
Find proteins for O74958 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
Go to UniProtKB:  O74958
Entity ID: 2
MoleculeChainsLengthOrganism
RNA (5'-R(P*UP*UP*UP*AP*AP*AP*CP*CP*UP*A)-3')B,D,F11Schizosaccharomyces pombe
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A, C
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.97 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.200 
  • Space Group: P 32
Unit Cell:
Length (Å)Angle (°)
a = 105.331α = 90.00
b = 105.331β = 90.00
c = 66.706γ = 120.00
Software Package:
Software NamePurpose
PHASERphasing
PHENIXrefinement
xia2data reduction
Cootmodel building
Aimlessdata scaling
DIALSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (United Kingdom)United KingdomMC_U105192715
European Research Council261151

Revision History 

  • Version 1.0: 2018-05-09
    Type: Initial release
  • Version 1.1: 2018-06-27
    Type: Data collection, Database references