6FLA

3H5 Fab bound to EDIII of DenV 2 Xtal form 1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.203 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Characterization of a potent and highly unusual minimally enhancing antibody directed against dengue virus.

Renner, M.Flanagan, A.Dejnirattisai, W.Puttikhunt, C.Kasinrerk, W.Supasa, P.Wongwiwat, W.Chawansuntati, K.Duangchinda, T.Cowper, A.Midgley, C.M.Malasit, P.Huiskonen, J.T.Mongkolsapaya, J.Screaton, G.R.Grimes, J.M.

(2018) Nat. Immunol. 19: 1248-1256


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Heavy chain
A, H
227N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Light Chain of 3H5
B, L
218N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Domain III of Dengue virus 2
G
98Dengue virus type 2 (strain Thailand/NGS-C/1944)Mutation(s): 0 
Find proteins for P14340 (Dengue virus type 2 (strain Thailand/NGS-C/1944))
Go to UniProtKB:  P14340
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
Domain III of Dengue virus 2
I
101Dengue virus type 2 (strain 16681-PDK53)Mutation(s): 0 
Find proteins for P29991 (Dengue virus type 2 (strain 16681-PDK53))
Go to UniProtKB:  P29991
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
B, L
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
H, L
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.203 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 40.840α = 90.00
b = 263.870β = 90.00
c = 272.830γ = 90.00
Software Package:
Software NamePurpose
BUSTERrefinement
PHASERphasing
xia2data reduction
xia2data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom204703/Z/16/Z
Wellcome TrustUnited Kingdom075491/Z/04

Revision History 

  • Version 1.0: 2018-10-24
    Type: Initial release
  • Version 1.1: 2018-10-31
    Type: Data collection, Database references