6FHH

Crystal structure of bat influenza A/H17N10 polymerase with viral RNA promoter bound to a 22-mer modified Pol II CTD peptide with serine 5 thiophosphorylated.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.258 
  • R-Value Work: 0.213 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Towards New Anti-Influenza Therapeutics: Structure-Activity Relationships in the Interaction between Heterotrimeric Influenza Polymerase and Pol II C-terminal domain

Claron, M.Lukarska, M.Uhrig, U.Sehr, P.Drncova, P.Lewis, J.D.Will, D.W.Cusack, S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Polymerase acidic protein
A
738Influenza A virusMutation(s): 0 
Gene Names: PA
Find proteins for H6QM92 (Influenza A virus)
Go to UniProtKB:  H6QM92
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
RNA-directed RNA polymerase catalytic subunit
B
776Influenza A virusMutation(s): 0 
Gene Names: PB1
EC: 2.7.7.48
Find proteins for H6QM91 (Influenza A virus)
Go to UniProtKB:  H6QM91
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Polymerase basic protein 2
C
809Influenza A virusMutation(s): 0 
Gene Names: PB2
Find proteins for H6QM90 (Influenza A virus)
Go to UniProtKB:  H6QM90
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetails
TYR-SER-PRO-THR-TPS-PRO-SER
X
22N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 7
MoleculeChainsSequence LengthOrganismDetails
TYR-SER-PRO-THR-TPS-PRO-SER
Y
22N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 4
MoleculeChainsLengthOrganism
RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*U)-3')R18Influenza A virus
Entity ID: 5
MoleculeChainsLengthOrganism
RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*GP*GP*G)-3')V16Influenza A virus
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
A, B, C
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
ZN
Query on ZN

Download SDF File 
Download CCD File 
B
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
TPS
Query on TPS
X, Y
NON-POLYMERC12 H18 N4 O4 P S

--

2RX
Query on 2RX
X, Y
L-PEPTIDE LINKINGC3 H8 N O5 P SSER
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.258 
  • R-Value Work: 0.213 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 267.770α = 90.00
b = 147.810β = 97.08
c = 88.410γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
REFMACrefinement
XSCALEdata scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research CouncilFrance322586

Revision History 

  • Version 1.0: 2019-01-30
    Type: Initial release