6FHD

Crystal Structure of the Amyloid-like, out-of-register beta-sheets, polymorph of the LFKFFK segment from the S. aureus PSMalpha3

  • Classification: PROTEIN FIBRIL
  • Organism(s): Staphylococcus aureus

  • Deposited: 2018-01-14 Released: 2018-08-08 
  • Deposition Author(s): Landau, M., Salinas, N.
  • Funding Organization(s): Israel Science Foundation; Deutsch-IsraelischeProjektkooperation (DIP); I-CORE Program of the Planning and Budgeting Committee and The Israel Science Foundation; U.S.-Israel Binational Science Foundation (BSF) 

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.187 
  • R-Value Work: 0.171 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Extreme amyloid polymorphism in Staphylococcus aureus virulent PSM alpha peptides.

Salinas, N.Colletier, J.P.Moshe, A.Landau, M.

(2018) Nat Commun 9: 3512-3512


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Psm alpha-3
B, A
6Staphylococcus aureusMutation(s): 0 
Gene Names: psm alpha-3
Find proteins for H9BRQ7 (Staphylococcus aureus)
Go to UniProtKB:  H9BRQ7
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
B
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.187 
  • R-Value Work: 0.171 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 41.030α = 90.00
b = 11.730β = 121.89
c = 24.610γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
XSCALEdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Israel Science FoundationIsrael560/16
Deutsch-IsraelischeProjektkooperation (DIP)Israel3655/1-1
I-CORE Program of the Planning and Budgeting Committee and The Israel Science FoundationIsrael1775/12
U.S.-Israel Binational Science Foundation (BSF)Israel2013254

Revision History 

  • Version 1.0: 2018-08-08
    Type: Initial release
  • Version 1.1: 2018-09-12
    Type: Data collection, Database references