6FCH

Crystal Structure of Human APRT wild type in complex with PRPP and Mg2+


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.175 
  • R-Value Work: 0.141 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural Insights into the Forward and Reverse Enzymatic Reactions in Human Adenine Phosphoribosyltransferase.

Huyet, J.Ozeir, M.Burgevin, M.C.Pinson, B.Chesney, F.Remy, J.M.Siddiqi, A.R.Lupoli, R.Pinon, G.Saint-Marc, C.Gibert, J.F.Morales, R.Ceballos-Picot, I.Barouki, R.Daignan-Fornier, B.Olivier-Bandini, A.Auge, F.Nioche, P.

(2018) Cell Chem Biol 25: 666-676.e4


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Adenine phosphoribosyltransferase
A, B
178Homo sapiensMutation(s): 0 
Gene Names: APRT
EC: 2.4.2.7
Find proteins for P07741 (Homo sapiens)
Go to Gene View: APRT
Go to UniProtKB:  P07741
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PRP
Query on PRP

Download SDF File 
Download CCD File 
A, B
ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID
C5 H13 O14 P3
PQGCEDQWHSBAJP-TXICZTDVSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A, B
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.175 
  • R-Value Work: 0.141 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 47.260α = 77.02
b = 47.350β = 69.53
c = 47.440γ = 61.78
Software Package:
Software NamePurpose
MxCuBEdata collection
Cootmodel building
PHASERphasing
XDSdata reduction
PDB_EXTRACTdata extraction
REFMACrefinement
Aimlessdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-08-15
    Type: Initial release