6F98 | pdb_00006f98

Solution structure of the RING domain of the E3 ubiquitin ligase HRD1

• PDB DOI: https://doi.org/10.2210/pdb6F98/pdb
• BMRB: 34217

• Classification: LIGASE
• Organism(s): Saccharomyces cerevisiae
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2017-12-14 Released: 2019-01-30 
• Deposition Author(s): Kniss, A., Kazemi, S., Lohr, F., Guntert, P., Dotsch, V.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 200 
• Conformers Submitted: 20 
• Selection Criteria: target function 

Literature

Solution structure of the RING domain of the E3 ubiquitin ligase HRD1

Kniss, A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 9.12 kDa 
• Atom Count: 625 
• Modeled Residue Count: 78 
• Deposited Residue Count: 78 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
E3 ubiquitin-protein ligase	A	78	Saccharomyces cerevisiae	Mutation(s): 0  Gene Names: HRD1, SCKG_1066

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZN	B [auth A], C [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 200 
• Conformers Submitted: 20 
• Selection Criteria: target function 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2019-01-30 
Deposition Author(s): Kniss, A., Kazemi, S., Lohr, F., Guntert, P., Dotsch, V.

Revision History  

• Version 1.0: 2019-01-30
  Type: Initial release
  
• Version 1.1: 2019-05-08
  Changes: Data collection
• Version 1.2: 2023-06-14
  Changes: Data collection, Database references, Other
• Version 1.3: 2024-06-19
  Changes: Data collection, Database references