6F1K

Structure of ARTD2/PARP2 WGR domain bound to double strand DNA without 5'phosphate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.250 
  • R-Value Work: 0.214 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural basis of DNA single strand break recognition and DNA end joining by human ARTD2

Obaji, E.Haikarainen, T.Lehtio, L.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Poly [ADP-ribose] polymerase 2
A
129Homo sapiensMutation(s): 0 
Gene Names: PARP2 (ADPRT2, ADPRTL2)
EC: 2.4.2.30
Find proteins for Q9UGN5 (Homo sapiens)
Go to Gene View: PARP2
Go to UniProtKB:  Q9UGN5
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (5'-D(*GP*CP*CP*TP*AP*GP*CP*TP*AP*CP*GP*TP*AP*GP*CP*TP*AP*GP*GP*C)-3')C20Homo sapiens
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
C
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.250 
  • R-Value Work: 0.214 
  • Space Group: P 63 2 2
Unit Cell:
Length (Å)Angle (°)
a = 119.270α = 90.00
b = 119.270β = 90.00
c = 73.580γ = 120.00
Software Package:
Software NamePurpose
XSCALEdata scaling
XDSdata reduction
PHASERphasing
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Academy of FinlandFinland--
Jane and Aatos Erkko foundationFinland--
Biocenter Oulu, University of OuluFinland--

Revision History 

  • Version 1.0: 2018-10-10
    Type: Initial release