Download MendeleyThe crystal structure of secreted antigen BPSL2520
Gourlay, L.J.To be published.
6F03
The crystal structure of secreted antigen BPSL2520
- PDB DOI: https://doi.org/10.2210/pdb6F03/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Burkholderia pseudomallei K96243
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2017-11-17 Released: 2018-12-05
- Funding Organization(s): Fondazione Cariplo
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.244
- R-Value Work: 0.202
- R-Value Observed: 0.204
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| BPSL2520 | 199 | Burkholderia pseudomallei K96243 | Mutation(s): 0 Gene Names: BPSL2520 |  | |
UniProt | |||||
Find proteins for Q63S01 (Burkholderia pseudomallei (strain K96243)) Explore Q63S01 Go to UniProtKB: Q63S01 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q63S01 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | J [auth B], K [auth D] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| ACT Query on ACT | F [auth A], G [auth A], H [auth A], I [auth B] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| CA Query on CA | E [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.244
- R-Value Work: 0.202
- R-Value Observed: 0.204
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 49.955 | α = 90 |
| b = 52.731 | β = 93.84 |
| c = 136.122 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| Auto-Rickshaw | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2018-12-05 Deposition Author(s): Gourlay, L.J.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Fondazione Cariplo | Italy | 2009-3577 |
Revision History (Full details and data files)
- Version 1.0: 2018-12-05
Type: Initial release
