6EZR

Crystal structure of GH20 Exo beta-N-Acetylglucosaminidase from Vibrio harveyi


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.37 Å
  • R-Value Free: 0.259 
  • R-Value Work: 0.214 
  • R-Value Observed: 0.217 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal structure of GH20 Exo beta-N-Acetylglucosaminidase from Vibrio harveyi

Meekrathok, P.Porfetye, A.T.Burger, M.Vetter, I.R.Suginta, W.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Beta-N-acetylglucosaminidase Nag2
A, B
652Vibrio harveyiMutation(s): 0 
EC: 3.2.1.52
UniProt
Find proteins for D9ISE0 (Vibrio harveyi)
Explore D9ISE0 
Go to UniProtKB:  D9ISE0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupD9ISE0
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.37 Å
  • R-Value Free: 0.259 
  • R-Value Work: 0.214 
  • R-Value Observed: 0.217 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 90.15α = 90
b = 130.71β = 112.99
c = 98.48γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing
Cootmodel building
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Thailand Research FundThailandPHD00842550
DAADGermanyBRG578001
Thailand Research FundThailandA/10/98020

Revision History  (Full details and data files)

  • Version 1.0: 2018-12-12
    Type: Initial release
  • Version 1.1: 2024-01-17
    Changes: Data collection, Database references, Refinement description