6EYW | pdb_00006eyw

Structure of Yeast Myosin 5 Cargo Binding Domain in Trigonal Space Group

• PDB DOI: https://doi.org/10.2210/pdb6EYW/pdb

• Classification: TRANSPORT PROTEIN
• Organism(s): Saccharomyces cerevisiae S288C
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2017-11-13 Released: 2018-11-21 
• Deposition Author(s): Tan, J., Khan, A.R.
• Funding Organization(s): Science Foundation Ireland

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.88 Å
• R-Value Free: 
  0.269 (Depositor), 0.270 (DCC) 
• R-Value Work: 
  0.219 (Depositor), 0.220 (DCC) 
• R-Value Observed: 
  0.224 (Depositor) 

Starting Model: experimental

Literature

Structure of yeast myosin V cargo binding domain in a new trigonal space group

Tan, J., Khan, A.R.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 48.8 kDa 
• Atom Count: 3,108 
• Modeled Residue Count: 381 
• Deposited Residue Count: 427 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Myosin-2	A [auth X]	427	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: MYO2, CDC66, YOR326W, O6167
UniProt
Find proteins for P19524 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P19524  Go to UniProtKB:  P19524

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.88 Å
• R-Value Free:  0.269 (Depositor), 0.270 (DCC) 
• R-Value Work:  0.219 (Depositor), 0.220 (DCC) 
• R-Value Observed: 0.224 (Depositor) 

Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 63.83	α = 90
b = 63.83	β = 90
c = 227.691	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2018-11-21 
Deposition Author(s): Tan, J., Khan, A.R.

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Funding Organization	Location	Grant Number
Science Foundation Ireland	Ireland	12/1A/1239

Revision History  

• Version 1.0: 2018-11-21
  Type: Initial release
  
• Version 1.1: 2019-01-23
  Changes: Advisory, Data collection, Derived calculations
• Version 1.2: 2024-01-17
  Changes: Data collection, Database references, Refinement description