6EPA

Structure of dNCS-1 bound to the NCS-1/Ric8a protein/protein interaction regulator IGS-1.76


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.82 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.189 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Deciphering the Inhibition of the Neuronal Calcium Sensor 1 and the Guanine Exchange Factor Ric8a with a Small Phenothiazine Molecule for the Rational Generation of Therapeutic Synapse Function Regulators.

Roca, C.Martinez-Gonzalez, L.Daniel-Mozo, M.Sastre, J.Infantes, L.Mansilla, A.Chaves-Sanjuan, A.Gonzalez-Rubio, J.M.Gil, C.Canada, F.J.Martinez, A.Sanchez-Barrena, M.J.Campillo, N.E.

(2018) J. Med. Chem. 61: 5910-5921


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
FI18190p1
A
187Drosophila melanogasterMutation(s): 1 
Gene Names: Frq2 (Dmel\CG5907, dNCS-1, Frq, frq, frq2, Frq2-RA)
Find proteins for Q9VWX8 (Drosophila melanogaster)
Go to UniProtKB:  Q9VWX8
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
A
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
CA
Query on CA

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Download CCD File 
A
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
BNQ
Query on BNQ

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Download CCD File 
A
~{N}-(1,3-benzothiazol-2-yl)-3,3-diphenyl-propanamide
C22 H18 N2 O S
GYQWKTIZRYVFEM-UHFFFAOYSA-N
 Ligand Interaction
PG0
Query on PG0

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Download CCD File 
A
2-(2-METHOXYETHOXY)ETHANOL
PEG 6000
C5 H12 O3
SBASXUCJHJRPEV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.82 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.189 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 54.843α = 90.00
b = 55.456β = 90.00
c = 61.259γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
XDSdata scaling
PHENIXrefinement
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Spanish Ministry of Economy and CompetitivenessSpainBIO2011-28184-C02-02
Spanish Ministry of Economy and CompetitivenessSpainBFU2014-59796-R
Spanish Ministry of Economy and CompetitivenessSpainRYC-2008-03449
European Commission - InstructSpainR&D Pilot Project APPID 99

Revision History 

  • Version 1.0: 2018-08-29
    Type: Initial release