6EO1

The electron crystallography structure of the cAMP-bound potassium channel MloK1 (PCO-refined)


Experimental Data Snapshot

  • Method: ELECTRON CRYSTALLOGRAPHY
  • Resolution: 4.50 Å

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

High-Resolution Cryoelectron Microscopy Structure of the Cyclic Nucleotide-Modulated Potassium Channel MloK1 in a Lipid Bilayer.

Kowal, J.Biyani, N.Chami, M.Scherer, S.Rzepiela, A.J.Baumgartner, P.Upadhyay, V.Nimigean, C.M.Stahlberg, H.

(2018) Structure 26: 20-27.e3

  • DOI: https://doi.org/10.1016/j.str.2017.11.012
  • Primary Citation of Related Structures:  
    6EO1

  • PubMed Abstract: 

    Eukaryotic cyclic nucleotide-modulated channels perform their diverse physiological roles by opening and closing their pores to ions in response to cyclic nucleotide binding. We here present a structural model for the cyclic nucleotide-modulated potassium channel homolog from Mesorhizobium loti, MloK1, determined from 2D crystals in the presence of lipids. Even though crystals diffract electrons to only ∼10 Å, using cryoelectron microscopy (cryo-EM) and recently developed computational methods, we have determined a 3D map of full-length MloK1 in the presence of cyclic AMP (cAMP) at ∼4.5 Å isotropic 3D resolution. The structure provides a clear picture of the arrangement of the cyclic nucleotide-binding domains with respect to both the pore and the putative voltage sensor domains when cAMP is bound, and reveals a potential gating mechanism in the context of the lipid-embedded channel.


  • Organizational Affiliation

    Center for Cellular Imaging and NanoAnalytics (C-CINA), Biozentrum, University of Basel, WRO-1058, Mattenstrasse 26, 4058 Basel, Switzerland.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cyclic nucleotide-gated potassium channel mll3241
A, B, C, D
355Mesorhizobium japonicum MAFF 303099Mutation(s): 0 
Gene Names: mll3241
Membrane Entity: Yes 
UniProt
Find proteins for Q98GN8 (Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099))
Explore Q98GN8 
Go to UniProtKB:  Q98GN8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ98GN8
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON CRYSTALLOGRAPHY
  • Resolution: 4.50 Å
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 252.45α = 90
b = 252.45β = 90
c = 209γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swiss National Science FoundationSwitzerland315230_146929, 205320_144427

Revision History  (Full details and data files)

  • Version 1.0: 2017-12-27
    Type: Initial release
  • Version 1.1: 2018-01-10
    Changes: Database references