6EKR

Crystal structure of Type IIP restriction endonuclease Kpn2I


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.88 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.209 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of Type IIP restriction endonuclease PfoI with cognate DNA

Tamulaitiene, G.Manakova, E.Jovaisaite, V.Grazulis, S.Siksnys, V.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Type ii site-specific deoxyribonuclease
A
312Klebsiella pneumoniaeMutation(s): 2 
Gene Names: R
EC: 3.1.21.4
Find proteins for Q93K38 (Klebsiella pneumoniae)
Go to UniProtKB:  Q93K38
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.88 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.209 
  • Space Group: I 21 3
Unit Cell:
Length (Å)Angle (°)
a = 134.794α = 90.00
b = 134.794β = 90.00
c = 134.794γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Auto-Rickshawphasing
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Research Council of LithuaniaLithuaniaMIP-41/2013
European UnionBioStruct-X (grant agreement 283570)

Revision History 

  • Version 1.0: 2018-10-10
    Type: Initial release