Crystal structure of KDM5B in complex with KDOPZ000049a.
srikannathasan, v.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Lysine-specific demethylase 5B,Lysine-specific demethylase 5B | A | 458 | Homo sapiens | Mutation(s): 0  Gene Names: KDM5B, JARID1B, PLU1, RBBP2H1 EC: 1.14.11 (PDB Primary Data), 1.14.11.67 (UniProt) | ![]() |
Find proteins for Q9UGL1 (Homo sapiens) Explore Q9UGL1  Go to UniProtKB:  Q9UGL1 | |||||
NIH Common Fund Data Resources | |||||
PHAROS:  Q9UGL1 GTEx:  ENSG00000117139 | |||||
Protein Feature ViewExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
B7K Query on B7K | A | 7-oxidanylidene-6-propan-2-yl-5-[1-(1-prop-2-enoylpiperidin-4-yl)pyrazol-4-yl]-6~{H}-pyrazolo[1,5-a]pyrimidine-3-carbonitrile C21 H23 N7 O2 KGLWYCXNVRPKIE-SFHVURJKSA-N | Ligand Interaction | ||
DMS Query on DMS | A | DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N | Ligand Interaction | ||
ZN Query on ZN | A | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | Ligand Interaction | ||
EDO Query on EDO | A | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | Ligand Interaction | ||
MN Query on MN | A | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N | Ligand Interaction |
Length ( Å ) | Angle ( ˚ ) |
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a = 141.82 | α = 90 |
b = 141.82 | β = 90 |
c = 151.75 | γ = 120 |
Software Name | Purpose |
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PHENIX | refinement |
PDB_EXTRACT | data extraction |
xia2 | data reduction |
xia2 | data scaling |
MOLREP | phasing |