6EIH

The crystal structure of 14-3-3 epsilon in complex with the phosphorylated NELFE peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.172 
  • R-Value Observed: 0.179 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

p38-MK2 signaling axis regulates RNA metabolism after UV-light-induced DNA damage.

Borisova, M.E.Voigt, A.Tollenaere, M.A.X.Sahu, S.K.Juretschke, T.Kreim, N.Mailand, N.Choudhary, C.Bekker-Jensen, S.Akutsu, M.Wagner, S.A.Beli, P.

(2018) Nat Commun 9: 1017-1017

  • DOI: 10.1038/s41467-018-03417-3
  • Primary Citation of Related Structures:  
    6EIH

  • PubMed Abstract: 
  • Ultraviolet (UV) light radiation induces the formation of bulky photoproducts in the DNA that globally affect transcription and splicing. However, the signaling pathways and mechanisms that link UV-light-induced DNA damage to changes in RNA metabolism remain poorly understood ...

    Ultraviolet (UV) light radiation induces the formation of bulky photoproducts in the DNA that globally affect transcription and splicing. However, the signaling pathways and mechanisms that link UV-light-induced DNA damage to changes in RNA metabolism remain poorly understood. Here we employ quantitative phosphoproteomics and protein kinase inhibition to provide a systems view on protein phosphorylation patterns induced by UV light and uncover the dependencies of phosphorylation events on the canonical DNA damage signaling by ATM/ATR and the p38 MAP kinase pathway. We identify RNA-binding proteins as primary substrates and 14-3-3 as direct readers of p38-MK2-dependent phosphorylation induced by UV light. Mechanistically, we show that MK2 phosphorylates the RNA-binding subunit of the NELF complex NELFE on Serine 115. NELFE phosphorylation promotes the recruitment of 14-3-3 and rapid dissociation of the NELF complex from chromatin, which is accompanied by RNA polymerase II elongation.


    Organizational Affiliation

    Institute of Molecular Biology (IMB), Ackermannweg 4, 55128, Mainz, Germany. p.beli@imb-mainz.de.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
14-3-3 protein epsilonA230Homo sapiensMutation(s): 0 
Gene Names: YWHAE
Find proteins for P62258 (Homo sapiens)
Explore P62258 
Go to UniProtKB:  P62258
NIH Common Fund Data Resources
PHAROS:  P62258
Protein Feature View
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  • Reference Sequence
  • Find similar proteins by:  Sequence   |   Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
SER-ILE-SEP-ARGB [auth P]4Homo sapiensMutation(s): 0 
Protein Feature View
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  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
SEP
Query on SEP
B [auth P]L-PEPTIDE LINKINGC3 H8 N O6 PSER
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.172 
  • R-Value Observed: 0.179 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 79.29α = 90
b = 81.186β = 90
c = 81.05γ = 90
Software Package:
Software NamePurpose
SCALAdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Emmy Noether ProgramGermany5342/1-1
SFBGermanySFB 1177
Marie Curie Career Integration Grant from the European Commission630763
LOEWE program Ubiquitin NetworksGermany--

Revision History  (Full details and data files)

  • Version 1.0: 2018-02-14
    Type: Initial release
  • Version 1.1: 2018-03-21
    Changes: Database references
  • Version 1.2: 2019-03-13
    Changes: Data collection, Derived calculations
  • Version 1.3: 2019-07-10
    Changes: Data collection
  • Version 1.4: 2019-10-16
    Changes: Data collection