6EIB

Structure of the active GGEEF domain of a diguanylate cyclase from Vibrio cholerae.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.941 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.194 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystallization and preliminary X-ray crystallographic analysis of active GGEEF domain of VC0395_0300: A diguanylate cyclase from Vibrio cholerae

Chouhan, O.P.Roske, Y.Heinemann, U.Biswas, S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Sensory box/GGDEF family protein
A, B, C, D
163Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)Mutation(s): 0 
Find proteins for A0A0H3AFM6 (Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395))
Go to UniProtKB:  A0A0H3AFM6
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B, C, D
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
ACT
Query on ACT

Download SDF File 
Download CCD File 
A, B, D
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A, B, C, D
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.941 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.194 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 65.905α = 90.00
b = 80.267β = 97.59
c = 71.696γ = 90.00
Software Package:
Software NamePurpose
XDSdata processing
PHENIXrefinement
XDSdata scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
DAADGermany91608443

Revision History 

  • Version 1.0: 2018-10-10
    Type: Initial release