6EI4

Crystal Structure of tyrosinase from Bacillus megaterium with B5N inhibitor in the active site


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.227 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Targeting Tyrosinase: Development and Structural Insights of Novel Inhibitors Bearing Arylpiperidine and Arylpiperazine Fragments.

Ferro, S.Deri, B.Germano, M.P.Gitto, R.Ielo, L.Buemi, M.R.Certo, G.Vittorio, S.Rapisarda, A.Pazy, Y.Fishman, A.De Luca, L.

(2018) J. Med. Chem. 61: 3908-3917


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Tyrosinase
A, B
288Bacillus megateriumMutation(s): 0 
Find proteins for B2ZB02 (Bacillus megaterium)
Go to UniProtKB:  B2ZB02
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
B5N
Query on B5N

Download SDF File 
Download CCD File 
A, B
[4-[(4-fluorophenyl)methyl]piperazin-1-yl]-(2-methylphenyl)methanone
C19 H21 F N2 O
UONQPTDUVPPQHY-UHFFFAOYSA-N
 Ligand Interaction
CU
Query on CU

Download SDF File 
Download CCD File 
A, B
COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.227 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 53.650α = 90.00
b = 78.100β = 104.52
c = 81.050γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
iMOSFLMdata reduction
PHENIXrefinement
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Israel science foundationIsrael419/15

Revision History 

  • Version 1.0: 2018-04-25
    Type: Initial release
  • Version 1.1: 2018-05-02
    Type: Data collection, Database references
  • Version 1.2: 2018-05-23
    Type: Data collection, Database references