6EHX | pdb_00006ehx

scFv AbVance: increasing our knowledge of antibody structural space to enable faster and better decision making in drug discovery

PDB DOI: https://doi.org/10.2210/pdb6EHX/pdb

Classification: IMMUNE SYSTEM
Organism(s): Homo sapiens
Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
Mutation(s): No

Deposited: 2017-09-15 Released: 2017-11-08
Deposition Author(s): Hargreaves, D.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free:
0.241 (Depositor), 0.240 (DCC)
R-Value Work:
0.207 (Depositor), 0.200 (DCC)
R-Value Observed:
0.209 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 2.1 of the entry. See complete history.

Literature

scFv AbVance: increasing our knowledge of antibody structural space to enable faster and better decision making in drug discovery

Hargreaves, D.

To be published.

Macromolecule Content

Total Structure Weight: 25.53 kDa
Atom Count: 2,019
Modeled Residue Count: 228
Deposited Residue Count: 240
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
scFv AbVance: increasing our knowledge of antibody structural space to enable faster and better decision making in drug discovery	A [auth B]	240	Homo sapiens	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.241 (Depositor), 0.240 (DCC)
R-Value Work: 0.207 (Depositor), 0.200 (DCC)
R-Value Observed: 0.209 (Depositor)

Space Group: P 4₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 81.559	α = 90
b = 81.559	β = 90
c = 116.395	γ = 90

Software Package:

Software Name	Purpose
BUSTER	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2017-11-08

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2017-11-08
Type: Initial release
Version 2.0: 2019-10-16
Changes: Atomic model, Data collection
Version 2.1: 2024-10-23
Changes: Data collection, Database references, Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.