6EG3

Crystal structure of human BRM in complex with compound 15


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.84 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.229 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Discovery of Orally Active Inhibitors of Brahma Homolog (BRM)/SMARCA2 ATPase Activity for the Treatment of Brahma Related Gene 1 (BRG1)/SMARCA4-Mutant Cancers.

Papillon, J.P.N.Nakajima, K.Adair, C.D.Hempel, J.Jouk, A.O.Karki, R.G.Mathieu, S.Mobitz, H.Ntaganda, R.Smith, T.Visser, M.Hill, S.E.Hurtado, F.K.Chenail, G.Bhang, H.C.Bric, A.Xiang, K.Bushold, G.Gilbert, T.Vattay, A.Dooley, J.Costa, E.A.Park, I.Li, A.Farley, D.Lounkine, E.Yue, Q.K.Xie, X.Zhu, X.Kulathila, R.King, D.Hu, T.Vulic, K.Cantwell, J.Luu, C.Jagani, Z.

(2018) J. Med. Chem. 61: 10155-10172


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Maltose/maltodextrin-binding periplasmic protein,Probable global transcription activator SNF2L2
A
621Escherichia coli O157:H7Homo sapiens
This entity is chimeric
Mutation(s): 0 
Gene Names: malE, SMARCA2 (BAF190B, BRM, SNF2A, SNF2L2)
EC: 3.6.4.-
Find proteins for P0AEY0 (Escherichia coli O157:H7)
Go to UniProtKB:  P0AEY0
Find proteins for P51531 (Homo sapiens)
Go to Gene View: SMARCA2
Go to UniProtKB:  P51531
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
J7G
Query on J7G

Download SDF File 
Download CCD File 
A
3-[(4-{[(2-chloropyridin-4-yl)carbamoyl]amino}pyridin-2-yl)ethynyl]benzoic acid
C20 H13 Cl N4 O3
ATBXCKLXXDLBAC-UHFFFAOYSA-N
 Ligand Interaction
EOH
Query on EOH

Download SDF File 
Download CCD File 
A
ETHANOL
C2 H6 O
LFQSCWFLJHTTHZ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.84 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.229 
  • Space Group: P 42 21 2
Unit Cell:
Length (Å)Angle (°)
a = 136.470α = 90.00
b = 136.470β = 90.00
c = 121.370γ = 90.00
Software Package:
Software NamePurpose
BUSTERrefinement
PHENIXphasing
PDB_EXTRACTdata extraction
XDSdata reduction
AutoPROCdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-10-31
    Type: Initial release
  • Version 1.1: 2018-11-14
    Type: Data collection, Database references
  • Version 1.2: 2018-12-05
    Type: Data collection, Database references