6EFZ

Crystal Structure of DIP-Theta Ig1-3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.499 Å
  • R-Value Free: 0.266 
  • R-Value Work: 0.243 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Neuron-Subtype-Specific Expression, Interaction Affinities, and Specificity Determinants of DIP/Dpr Cell Recognition Proteins.

Cosmanescu, F.Katsamba, P.S.Sergeeva, A.P.Ahlsen, G.Patel, S.D.Brewer, J.J.Tan, L.Xu, S.Xiao, Q.Nagarkar-Jaiswal, S.Nern, A.Bellen, H.J.Zipursky, S.L.Honig, B.Shapiro, L.

(2018) Neuron 100: 1385


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Dpr-interacting protein theta
A
302Drosophila melanogasterMutation(s): 0 
Gene Names: DIP-theta (31646, CG14008, CG14009, CG31646-RA, CT33566, Dmel\CG31646)
Find proteins for Q9VMN6 (Drosophila melanogaster)
Go to UniProtKB:  Q9VMN6
Small Molecules
Ligands 6 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ACT
Query on ACT

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A
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
MAN
Query on MAN

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A
ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
 Ligand Interaction
FUC
Query on FUC

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Download CCD File 
A
ALPHA-L-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-SXUWKVJYSA-N
 Ligand Interaction
BMA
Query on BMA

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Download CCD File 
A
BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
 Ligand Interaction
PEG
Query on PEG

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Download CCD File 
A
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
 Ligand Interaction
NAG
Query on NAG

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Download CCD File 
A
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.499 Å
  • R-Value Free: 0.266 
  • R-Value Work: 0.243 
  • Space Group: I 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 79.103α = 90.00
b = 146.476β = 90.00
c = 189.992γ = 90.00
Software Package:
Software NamePurpose
Aimlessdata scaling
XDSdata reduction
PHASERphasing
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited States--

Revision History 

  • Version 1.0: 2018-11-28
    Type: Initial release
  • Version 1.1: 2018-12-19
    Type: Data collection, Database references
  • Version 1.2: 2019-01-02
    Type: Data collection, Database references